Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi116g00012 ATGGAGCAGCGAAAGCTTATGGTTACGGGTATCCCGTGGGACGTTGATAATGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGACCTAGAAGATTGTTATGTTATAAAGGAGCGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTAACATTTACATCATTGGATGATGCTAAGAAAGTGCTATCCAGTGAACACATTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGGTCGAGGATCTAAACCACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAGCTTGATGAAAGAAATCCATGAACTGGGAGGATCTGATTTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGAAGCACTTGGTGCTCCGACTATGTATGACCATCCCAGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCATCTTCCCCCGGAGGCAACCACAGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATTTTAGATGTTTATATTCCTAGGGATGTCAATAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCATGTCTCTCAAAGATCTCATGAAATTTGTGGACATCAGGTTGCTATAGATTCAGCCGCACCTCTTGATTATGCAGGGCCTAGTGGCAATACTATGGTGACTAGTATGGATTCTTTCAGGGCATATGGCGCTCCTGCGAGGCCATATTTTGATCAAAGTCCTGCGAGGCCATATTTTGATCAAAGTTCTGCAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTGTAAGGCCTTATGTTGATCAAAGTCCCGTGAGGCCTTATGGGAGGATGTACGATAACTTGGATCTCGATAATTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1119 0.4281 MEQRKLMVTGIPWDVDNEGLKEYMSKFGDLEDCYVIKERSTGRSRGFGYVTFTSLDDAKKVLSSEHILGNRMLEVKVATPKGRGSKPHRGIGFITFASADSVESLMKEIHELGGSDLVVDRATPKEDDFKPIGRTRTSQGGYGAYNNAYISAPTRYEALGAPTMYDHPSSIYGRGEPVRGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVNKSGHRGFGFVTFADYGVADHVSQRSHEICGHQVAIDSAAPLDYAGPSGNTMVTSMDSFRAYGAPARPYFDQSPARPYFDQSSARPYFDRSSIRPYFDRSSIRPYFDRSSVRPYVDQSPVRPYGRMYDNLDLDNWGYGVASRRPSRADWRYRPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi116g00012 372 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 4 82 - -
Vivi116g00012 372 Gene3D - 1 84 IPR012677 -
Vivi116g00012 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vivi116g00012 372 SUPERFAMILY RNA-binding domain, RBD 182 268 IPR035979 GO:0003676
Vivi116g00012 372 Gene3D - 85 128 IPR012677 -
Vivi116g00012 372 Gene3D - 180 262 IPR012677 -
Vivi116g00012 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 259 IPR000504 GO:0003723
Vivi116g00012 372 SUPERFAMILY RNA-binding domain, RBD 4 126 IPR035979 GO:0003676
Vivi116g00012 372 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vivi116g00012 372 SMART rrm1_1 184 255 IPR000504 GO:0003723
Vivi116g00012 372 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vivi116g00012 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 242 IPR000504 GO:0003723
Vivi116g00012 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi116g00012 3 88 C2H2 Transcription Factor Family AT2G19380 32.955 4.41e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi116g00012 K14411 - gmx:100795240 451.825