Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi116g00011 ATGGAGCAGCGAAAGCTTATGGTTACGGGTATCCCGTGGGACGTTGATAATGAGGGCTTGAAAGAATATATGAGCAAATTTGGTGACCTAGAAGATTGTTATGTTATAAAGGAGCGGTCAACTGGCCGGTCTCGCGGTTTTGGATATGTAACATTTACATCATTGGATGATGCTAAGAAAGTGCTATCCAGTGAACACATTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGATGAAATGAGGGCACCAGTCAAAAAGGTTTCCAGAATCTTTGTGGCAAGGATTGCCCCATCAGTAACAGAAGCAGTTTTTAGGAGTCATTTTGAGAAATACGGTGATATAATAGATTTGTTTATGCCAAAGGGTCGAGGATCTAAACCACATCGAGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAGCTTGATGAAAGAAATCCATGAACTGGGAGGATCTGATTTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGTCACAAGGAGGATATGGTGCATATAATAATGCTTATATTTCTGCACCAACTAGATATGAAGCACTTGGTGCTCCGACTATGTATGACCATCCCAGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGCCATCTTCCCCCGGAGGCAACCACAGAGGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATTTTAGATGTTTATATTCCTAGGGATGTCAATAAATCTGGTCATAGAGGCTTTGGTTTTGTGACTTTTGCGGACTATGGTGTTGCAGATCATGTCTCTCAAAGATCTCATGAAATTTGTGGACATCAGGTTGCTATAGATTCAGCCGCACCTCTTGATTATGCAGGGCCTAGTGGCAATACTATGGTGACTAGTATGGATTCTTTCAGGGCATATGGCGCTCCTGCGAGGCCATATTTTGATCAAAGTCCTGCGAGGCCATATTTTGATCAAAGTTCTGCAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTATAAGGCCTTATTTTGATCGAAGTTCTGTAAGGCCTTATGTTGATCAAAGTCCCGTGAGGCCTTATGGGAGGATGTACGATAACTTGGATCTCGATAATTGGGGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1251 0.4237 MEQRKLMVTGIPWDVDNEGLKEYMSKFGDLEDCYVIKERSTGRSRGFGYVTFTSLDDAKKVLSSEHILGNRMLEVKVATPKDEMRAPVKKVSRIFVARIAPSVTEAVFRSHFEKYGDIIDLFMPKGRGSKPHRGIGFITFASADSVESLMKEIHELGGSDLVVDRATPKEDDFKPIGRTRTSQGGYGAYNNAYISAPTRYEALGAPTMYDHPSSIYGRGEPVRGMSKKIFVGHLPPEATTEDLRLYFGRFGHILDVYIPRDVNKSGHRGFGFVTFADYGVADHVSQRSHEICGHQVAIDSAAPLDYAGPSGNTMVTSMDSFRAYGAPARPYFDQSPARPYFDQSSARPYFDRSSIRPYFDRSSIRPYFDRSSVRPYVDQSPVRPYGRMYDNLDLDNWGYGVASRRPSRADWRYRPY 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi116g00011 416 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vivi116g00011 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Vivi116g00011 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Vivi116g00011 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 286 IPR000504 GO:0003723
Vivi116g00011 416 SMART rrm1_1 93 164 IPR000504 GO:0003723
Vivi116g00011 416 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vivi116g00011 416 SMART rrm1_1 228 299 IPR000504 GO:0003723
Vivi116g00011 416 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Vivi116g00011 416 SUPERFAMILY RNA-binding domain, RBD 226 312 IPR035979 GO:0003676
Vivi116g00011 416 SUPERFAMILY RNA-binding domain, RBD 89 189 IPR035979 GO:0003676
Vivi116g00011 416 Gene3D - 85 199 IPR012677 -
Vivi116g00011 416 Gene3D - 224 306 IPR012677 -
Vivi116g00011 416 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Vivi116g00011 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vivi116g00011 416 Gene3D - 1 84 IPR012677 -
Vivi116g00011 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Vivi116g00011 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Vivi116g00011 416 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 225 322 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi116g00011 6 276 Eukaryotic Initiation Factors Gene Family AT2G36660 22.545 3.20e-13 69.7