Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi116g00010 ATGGACATGATCTCAATGATGATGCAAATGGAAAAGTTTCCTGATAATTTCTCTGAACCTTCCTCTTACCAAGAAATAATCCATGGAACTTCCAATACCAATACTGTTCCATTATTTAACTTCTCTCCACAAACTTTTACTACTGATCCATTTCTACACTCTAATGTCAGTTTCAACAACACTATCCAAGTACCATCTTCTCATTATAACCCTAATTCTTCTGATAAGAAGAACTCCATGGCGGCCATGAGAGAAATGATATTCAGAATAGCAGTGATGCAACCGGTGCATATCGATCCGGAGTCAATTAGGCCACCGAAGAGAAGGAACGTGAAGATATCGAAGGATCCGCAGAGCGTAGCGGCGAGGCATAGAAGGGAAAGGATAAGTGAAAGGATAAGGATACTGCAGAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTGGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAGGTTCAGAGTTTGGAACAAGCTGGGGCTAATAATAGATCATCACACATTGGTGCTGGTGCTGGTGCTGGTGGTGTTATGAATAATTTTAATGTAATGAATTATTCTTCTGCTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGTAGGGTCTACTTCTAAACAATTGCTTAGCTAG 672 0.3943 MDMISMMMQMEKFPDNFSEPSSYQEIIHGTSNTNTVPLFNFSPQTFTTDPFLHSNVSFNNTIQVPSSHYNPNSSDKKNSMAAMREMIFRIAVMQPVHIDPESIRPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANNRSSHIGAGAGAGGVMNNFNVMNYSSALMMKGCQPFQMVGSTSKQLLS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi116g00010 223 CDD bHLH_AtIND_like 114 170 - -
Vivi116g00010 223 SMART finulus 119 168 IPR011598 GO:0046983
Vivi116g00010 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 172 IPR036638 GO:0046983
Vivi116g00010 223 Gene3D - 112 180 IPR036638 GO:0046983
Vivi116g00010 223 FunFam BHLH transcription factor 116 180 - -
Vivi116g00010 223 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 33 216 IPR045843 GO:0003700|GO:0006355
Vivi116g00010 223 Coils Coil 152 172 - -
Vivi116g00010 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Vivi116g00010 223 Pfam Helix-loop-helix DNA-binding domain 122 162 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi116g00010 6 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.005 1.41e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi116g00010 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi116g00010 - - vvo:131624678 416.001