Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi116g00006 ATGGATTGGGTACGAGGAGAATCACTTGGTAGAGGAACCTTTGCAACCGTTCATTTAGTCTTACCCAAAGGAAGTTCAAATTCCACTCTTTTTCCTTCTCCGACAGCCGTCAAAACATCCGAGGTTTCAACCTCGTATACCCTCAAAAACGAGAGACATGTTCTTGATTGTCTAGGTTCTTGTCAACAAATCATTCGCTGTTTCGGAGATGATTATACCTTTGAGAATGGCCACGAGTATTACAATTTGTTTCTTGAATACGCTTCCGCTGGAACTCTTGCTGATCAAGTTAAATTCCACGGTGGCCGGATTCCAGAACTAAATATTCGCGGTTCCGTGAGGTCGGTCGTGGAGGGTCTTCACCATATTCATAGCAATGGATTCGTTCATTGTGATATAAAGCTTCAAAACATTCTTGTATTTCATGATGGTGGAATTAAAATCGCTGATTTTGGTCTTGCGAAAAAATCAGGGGAAGAGCAGAGTGAAAAACAGAGGTTCGAATGCAGGGGAACTCCACTGTATATGTCGCCGGAATCAGTGATCCACGGAGAGCATGAGCCGCCGGCAGATATTTGGGCACTTGGGTGTGCCATGGTGGAGATGATGACTGGAAAACCAGCATGGAATATAGAGAAGGATTCGAATATGTTTTCGTTGTTGCTTCAAATTGGTGCAGGAGAAGAATCTCCGATGATACCAGAAGATTTATCAAAAGAGGGAAAAGATTTTGTTGACAAGTGTTTTATTAAGGATCCAAGAAAAAGATGGACGGCTGAGATGCTTTTGGATCATCCTTTTATTGAAGAAGTGAAGAGTGTTAACGAACCATCACCAAGAAATCATTTTGATTTCAATGATTGGGTTTCAAGTGTAGGTGATGCAGCTCCAAGCTCCCCGGAATATGAAGAATCGTGTCAGTGGGATTTTGATAATTGTTCTTGTTCGCCAGCGGATCGGCTCCGGCAGCTTGGGACGGTTGAAGTGCCAGTGAGTTGGTCGGAATCAGACAGTTGGATTAGTGTTAGGTGA 1032 0.4322 MDWVRGESLGRGTFATVHLVLPKGSSNSTLFPSPTAVKTSEVSTSYTLKNERHVLDCLGSCQQIIRCFGDDYTFENGHEYYNLFLEYASAGTLADQVKFHGGRIPELNIRGSVRSVVEGLHHIHSNGFVHCDIKLQNILVFHDGGIKIADFGLAKKSGEEQSEKQRFECRGTPLYMSPESVIHGEHEPPADIWALGCAMVEMMTGKPAWNIEKDSNMFSLLLQIGAGEESPMIPEDLSKEGKDFVDKCFIKDPRKRWTAEMLLDHPFIEEVKSVNEPSPRNHFDFNDWVSSVGDAAPSSPEYEESCQWDFDNCSCSPADRLRQLGTVEVPVSWSESDSWISVR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi116g00006 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vivi116g00006 343 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Vivi116g00006 343 ProSiteProfiles Protein kinase domain profile. 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi116g00006 343 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi116g00006 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Vivi116g00006 343 Gene3D Transferase(Phosphotransferase) domain 1 2 301 - -
Vivi116g00006 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 299 - -
Vivi116g00006 343 SMART serkin_6 3 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi116g00006 343 CDD STKc_MAPKKK 2 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi116g00006 1 343 MAP Kinase Kinase Kinase AT4G36950 52.991 9.44e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi116g00006 Pkinase 2.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi116g00006 - - gmx:100798607 457.603