LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1164g00005	ATGATGTCTGATGAATCACAGAGGGTTGTGGTGATCCACCATGCATCTAGTGACTTAAGTACAAAAGCACTTAAATGGGCTATTAATGGCTTTTCACTTGATCATGGAGACACTCTTACACTTGTTGCAATTCTTCGCCATGTAAATAGTCCAACTAGTGCCCGATTTCGTGCAATATTTGGTACTGATCAAAATATTATTGAGGAAGAGGTTGCTAAGAAGAAAGAAAAACTGCATAATCATCCATCTATCAGAAAAATTTCTGAGCAGTGTGAAAAACACAAGATTCGATTCTTGATAGAAGTGCTTCCGGGAAAGTTACCGGAGCATGCTATAAGCGCTGCCGTCCGTTTGAAAGCAACATCGGTTATACTTGATAGAGACATGAAGAAGTATAAGAAGGATTTCATGGAGAGTCTCTCTTGTGCTTTGCTGATAATGAAAAGTGGTAACTCCATTAAGCACTTGAGAGGGCCAAGGCAAACAAAATTTTCTTATACAGGTTATGACAATTCAGTTCCTGAATTCTCACCGAGTTTGTGGAGCATGACAAACGCGGTTTTCCGTTCCAGATCGAGCTCTGACCTAACGAAAATAGGCTGTCATCAACTTCATTGTCAAACGAAACAAACGCCCGAAGATAAAGATCTAGATATGGCGAGAGGCTATTGCCTATTACCGATTCCAGATAATCAAAAGACTAGTAGTGTTCTTGAAATGTATCCTAAGGAGACAGAATTTGAACATATCAGAAACCATAAAACGTATCAAATAGTCGAGAAGTTCAAGAATTCTGTTTGCAAAGTGTGTGAGAACAAAAGGCCGAAATTTGAGTTGATGAAAGAATTCACATATGTGGAGCTGCATGAAGCAACACATGGTTTTTCGCCGAAGAACTATTTATCGGAAGGTGGATTTGGTTCGGTTTATTGGGGGAAGATGCAAGGACTGAAGATTGCTGTTAAGAAGCATAAGTTTGCAAGTCTTCAAGGAGAGAAGGAATTCAAATCTGAAGTTAATGCACTAAGCAAAGCAATACATGAAAATGTGGTTATGCTGCTAGGTTCTTGTTCTGAGGGAAATAACAGATTTCTTGTGTATGAATTTGTTTGCAATGGCTCACTTGATCAACATTTATCGGAACACTCGAGAAAGCCTCTTACTTGGCCCGACAGGATCAAAGTAGCGATTGGAGCTGCGAAAGGCTTATTGTATTTGCATGAGAATAATATAATACATAGAGATGTGAGACCAAGTAACATCCTTGTCACACATGATTATGAAGCAATGCTGGGAGATTTTGGTCTGGCTCGAACGGAACAAATGGACTCGGTATACTCTACCGACGTTGTTGGAACTTTAGGATATATGGCACCAGAATATGCGGAATCTGGTAAAGTATCAACCAAATCAGATGTGTATTCTTTTGGGGTGGTGCTTCTTCAGCTTATAACAGGAATGAGGACCACAGACAAAAAGATTGGACACAAAAGTCTTGTGGGATGGGCTAGGCCATTGCTAAAGGAAAGGAACTATCCGGATCTAATTGACGAAAGGATGATGGATACCTATGATTGCCATCAGCTCTTTTGGATGATTCGATTAGCAGAAAAATGTCTCACCAGGGATCCTCATAAGCGATTACCAATGGATACAGTGGTTAGTGCATTGACTCATATAGTAGAAGGCAGCACATGTAGCATGGTCCTAAGAGACTGTTCTCCAGCACGGTCTGATTCATCTTATGACATGTCAGAATCTCCTATGTCAGATGTCTCACCAGAATCAGAAGATGAAGAAGATGGAATTGTCTGTGTAGGGTGCACCACAGTTAACTTACGACCTCCACCATCTCCTCCATTAGGAAGCACTTCATGGAGTAGTACATCAAGCACATGTGTTCACATGGCTGAATGA	1917	0.4058	MMSDESQRVVVIHHASSDLSTKALKWAINGFSLDHGDTLTLVAILRHVNSPTSARFRAIFGTDQNIIEEEVAKKKEKLHNHPSIRKISEQCEKHKIRFLIEVLPGKLPEHAISAAVRLKATSVILDRDMKKYKKDFMESLSCALLIMKSGNSIKHLRGPRQTKFSYTGYDNSVPEFSPSLWSMTNAVFRSRSSSDLTKIGCHQLHCQTKQTPEDKDLDMARGYCLLPIPDNQKTSSVLEMYPKETEFEHIRNHKTYQIVEKFKNSVCKVCENKRPKFELMKEFTYVELHEATHGFSPKNYLSEGGFGSVYWGKMQGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCNGSLDQHLSEHSRKPLTWPDRIKVAIGAAKGLLYLHENNIIHRDVRPSNILVTHDYEAMLGDFGLARTEQMDSVYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKKIGHKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPHKRLPMDTVVSALTHIVEGSTCSMVLRDCSPARSDSSYDMSESPMSDVSPESEDEEDGIVCVGCTTVNLRPPPSPPLGSTSWSSTSSTCVHMAE	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1164g00005	638	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	411	423	IPR008266	GO:0004672\|GO:0006468
	Vivi1164g00005	638	Gene3D	HUPs	1	145	IPR014729	-
	Vivi1164g00005	638	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1	370	572	-	-
	Vivi1164g00005	638	Gene3D	Transferase(Phosphotransferase) domain 1	370	572	-	-
	Vivi1164g00005	638	PANTHER	OS01G0253100 PROTEIN	236	562	-	-
	Vivi1164g00005	638	MobiDBLite	consensus disorder prediction	615	638	-	-
	Vivi1164g00005	638	Gene3D	Phosphorylase Kinase; domain 1	266	369	-	-
	Vivi1164g00005	638	SUPERFAMILY	Protein kinase-like (PK-like)	280	577	IPR011009	-
	Vivi1164g00005	638	Pfam	Protein tyrosine and serine/threonine kinase	299	557	IPR001245	GO:0004672\|GO:0006468
	Vivi1164g00005	638	MobiDBLite	consensus disorder prediction	576	600	-	-
	Vivi1164g00005	638	FunFam	Proline-rich receptor-like protein kinase PERK8	257	369	-	-
	Vivi1164g00005	638	SMART	tyrkin_6	295	557	IPR020635	GO:0004713\|GO:0006468
	Vivi1164g00005	638	MobiDBLite	consensus disorder prediction	623	638	-	-
	Vivi1164g00005	638	ProSiteProfiles	Protein kinase domain profile.	295	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1164g00005	283	571	Trihelix Transcription Factor Family	AT5G38560	44.702	1.45e-76	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Vivi1164g00005		PK_Tyr_Ser-Thr	9.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1164g00005	-		-	lsv:128129542	1023.46