Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1163g00011 ATGGCTTCGAGATTTTGGACTCAGGGTGATAGTGATTCGGAAGAGGAGGAACAAAGTGATTATGATGAGGAAATTGAAAATGCAGCAGTTGAATCTGCTGCAACTCAAGGCAATAAAAGCAATTACTACCTTCAGGGTAATGCAACTGACAGTGATGATGAGGATGGTCAGAAGCGAGTTGTTAAATCGGCGAAAGATAAGCGGTTTGATGAAATGGCTTCTACCGTTGATCAGATGAGGAATGCTACTAAGATCAATGATTGGGTTAGTTTGCAGGAGAGCTTTGATAAGATTAATAAGCAGCTCGAGAAGGTTATGCGGGTTATTGAGTCGGTGAAGGTTCCTAATCTTTATATCAAGGCTCTTGTGATGCTGGAAGATTTCTTGGCTGCGGCTTTGGCGAATAAGGATGCTAAAAAGAAGATGAGTAGCAGTAATGCTAAAGCGTTTAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAAGAGTTGATTAACAAGTGCAGGGAGAATCCTGAGAGTGAGGAGGAGAAGGATGAAGAGGAGGAGTCTGATGAAGAATATGAGAGTGATGGTGAGATTATTGAGCCTGATCAGCTCCGGAAGCAGGAACCGAAATCTGATTCTGAAGCTGAGTATGAAGATGAGAAGCCTGATGCTGATGGTGAAGGGGGTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAGGCAGTTCATGAAAAACCCTAGTGAGATCACGTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGGGGGAAGAAAGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACGTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGGAAATTCTTTTCAGTGTGGTTTCTGCCCAGTTTGATGTTAATCCTGGCCTTAGTGGGCATATGCCCATCACTGTGTGGAAGAAGTGTGTACAGAATATGTTGGTCATTCTTGATATTCTAGTGCAGCACTCAAACATAAAGGTTGATGATTCAGTTGAACTAGATGAGAATGAAACTAAGAAAGGGGCTGACTATGACGGGCCTATTCGTGTCTGGGGCAACTTAGTTGCTTTCTTAGAGAAAATTGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCCTTGTTTGTTGTTCTTGCACAGAATGTCCAGGAGTATCTTGAAAGGATCGGAGATTTTAAAGCTTCCTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAATCTCAAGAAGTTTATGAGGCAATGAGGAAATTGGCTGAGATGACTGAAGATGCAGGTGAGGAGAGTGAGGAGTCAAAAGGTTTTGAGGATACAAGAATTCCCACTGCATTCGTTGTTACTCCCGAGGTTGTAGCACGGAAACCCACCTTCCCGGAGAATAGCAGGACTTTAATGGATGTATTAGTATCACTAATATACAAATATGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCACAGTAGCCCGTGATCTGTTGCTAATGAGTCATTTGCAAGAAAATGTTCATCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTCCGGGCTGGGCTGGTTTCTGAAGCTCATGGCTGTCTAGCTGAACTCTATTCTGGTGGAAGGGTGAAAGAATTGCTCGCACAAGGAGTCTCACAGAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGAAGGCAGATGCCATATCATATGCATATTAATCTCGAGCTCTTGGAATCTGTGCATCTCACATCTGCTATGCTGTTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCAAAGCGAAGGATCATCAGTAAGAATTTCCGTCGCTTGCTTGAGGTCAGTGAGAAACAAACATTTACGGGTCCTCCTGAAAATGTTAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAAAGGAGACTTCCTCAAGGCTTTTGACATTATTGCTTCTCTTGACGTATGGAAATTTGTGAAAAACCGAGACACCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGAACTTACCTATTTACTTTTGCTTCATCATATGATTCCTTGAGTGTGAATCAGCTCACAACTTTTTTTGAACTCTCTCTTCCTCGTGTTCATAGTATTGTCAGCAGGATGATGGTCAACGAGGAGCTTCATGCAAGCTGGGATCAGCCATCTGGGTGCATTATTTTCCGAAATGTCGAACACTCAAGACTGCAGGCTTTGGCTTTCCAGTTGACTGAGAAATTATCTATCCTTGCAGAGAGCAATGAAAGAGCTACAGAAGCAAGGCTAGGTGGTGGTGGGTTGGATCTGCCTCCAAGACGGAGGGATGGCCAGGATTATGCTGCCGCAGCTGCTGGTGGTGGAACATCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAGGGTGGTGGACGCGCAGGATATGGTGGAAGGGCATTGTCGTTCAATCAAGCAGGTGGGAGTGGCGGCTATTCAAGAGGACGAGGAACCGGTGGAGGTGGCTATCAAAGTTCAGGGAGGAGTCAAGGGGGTTCAGCATTGAGGGCCCAGGGAGATGGATCTACCCGCATGGTTAGCCTTAGGGGAGTTCGAGCTTAA 2787 0.4449 MASRFWTQGDSDSEEEEQSDYDEEIENAAVESAATQGNKSNYYLQGNATDSDDEDGQKRVVKSAKDKRFDEMASTVDQMRNATKINDWVSLQESFDKINKQLEKVMRVIESVKVPNLYIKALVMLEDFLAAALANKDAKKKMSSSNAKAFNSMKQKLKKNNKQYEELINKCRENPESEEEKDEEEESDEEYESDGEIIEPDQLRKQEPKSDSEAEYEDEKPDADGEGGWDQKLSKKDRLLERQFMKNPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLVILDILVQHSNIKVDDSVELDENETKKGADYDGPIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPLFVVLAQNVQEYLERIGDFKASSKVALKRVELIYYKSQEVYEAMRKLAEMTEDAGEESEESKGFEDTRIPTAFVVTPEVVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFTVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRAGLVSEAHGCLAELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRRIISKNFRRLLEVSEKQTFTGPPENVRDHVMAATRVLIKGDFLKAFDIIASLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFASSYDSLSVNQLTTFFELSLPRVHSIVSRMMVNEELHASWDQPSGCIIFRNVEHSRLQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGTSSGGRWQDLSYSQTRQGGGRAGYGGRALSFNQAGGSGGYSRGRGTGGGGYQSSGRSQGGSALRAQGDGSTRMVSLRGVRA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 35 50 - -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 882 928 - -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 51 66 - -
Vivi1163g00011 928 SUPERFAMILY "Winged helix" DNA-binding domain 717 792 IPR036390 -
Vivi1163g00011 928 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 923 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi1163g00011 928 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 866 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 197 216 - -
Vivi1163g00011 928 Coils Coil 147 174 - -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 820 855 - -
Vivi1163g00011 928 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 35 66 - -
Vivi1163g00011 928 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 170 232 - -
Vivi1163g00011 928 Pfam PCI domain 661 789 IPR000717 -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1163g00011 928 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 894 912 - -
Vivi1163g00011 928 MobiDBLite consensus disorder prediction 178 196 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1163g00011 1 928 Eukaryotic Initiation Factors Gene Family AT3G56150 67.656 0.0 1183