Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1163g00010 ATGGCTTCTGCTAGCCTTGGTAGTGGAAATGGAAATGGTGGTGTTGGTAGTTCTAGGTCTGCTTTGAGAGGTTCGTCGAGTTCCGTTGATTGGCTTGGGAGAGAGATGCTTGAGATGAGGCTCAGAGACAAGGTTGAGCATGGCCATGATGATGATGATGATGATGATGACAGAGAGAGTGAGCCTGATATCATTGATGGCGTGGGTGCTGAAACAGGACATGTAATACGAACCAGCATTGGTGGACGAAATGGTCAATCTAAACAGAATGTTAGTTATATCGCGGAACACGTAGTAGGGACGGGCTCTTTTGGCACTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGCTACAGATTATGCAAATGCTGGACCATCCAAATATTGTCGCCCTGAGGCATTGTTTCTTTTCGACGACCGACAAAGAAGAGCTTTACTTGAATCTTGTACTAGAATACGTTCCTGAAACCGTGAATCGTATTGCGAGGAACTATAGCAGGATTAACCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGGGCTCTTGCTTACATACATAATTGCATTGGAATTTGTCATCGTGACATCAAACCTCAGAACCTACTTGTAAACCCACACACTCATCAGCTGAAGCTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCATATATTTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACCACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTGGTTGAAATCATCAAGGTTTTGGGAACTCCTACAAGGGAAGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCAGAAGCGGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATCCACCCCTTCTTTGATGAATTGAGGGACCCAAGCACCCGCCTTCCCAATGGCCGCCCACTGCCTCCGCTGTTTAACTTCAAACCTCAGGAACTTTCTGGTATTCCACCTGATGTCATCAACCGGCTTATTCCAGAACATGCCCGGAAACAGAACTTATTTATGGCTTTGCACACCTAG 1296 0.4383 MASASLGSGNGNGGVGSSRSALRGSSSSVDWLGREMLEMRLRDKVEHGHDDDDDDDDRESEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1163g00010 431 ProSitePatterns Protein kinases ATP-binding region signature. 99 123 IPR017441 GO:0005524
Vivi1163g00010 431 FunFam Shaggy-related protein kinase kappa 173 421 - -
Vivi1163g00010 431 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 59 423 - -
Vivi1163g00010 431 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1163g00010 431 MobiDBLite consensus disorder prediction 42 68 - -
Vivi1163g00010 431 Gene3D Phosphorylase Kinase; domain 1 78 172 - -
Vivi1163g00010 431 CDD STKc_GSK3 88 380 IPR039192 -
Vivi1163g00010 431 FunFam Glycogen synthase kinase-3 beta 77 172 - -
Vivi1163g00010 431 SMART serkin_6 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1163g00010 431 MobiDBLite consensus disorder prediction 1 27 - -
Vivi1163g00010 431 Gene3D Transferase(Phosphotransferase) domain 1 173 421 - -
Vivi1163g00010 431 Pfam Protein kinase domain 95 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1163g00010 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vivi1163g00010 431 SUPERFAMILY Protein kinase-like (PK-like) 92 404 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1163g00010 99 385 Core Cell Cycle Gene Families AT1G76540 35.254 1.38e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi1163g00010 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1163g00010 K03083 - gmx:100799387 798.505