Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1163g00002 ATGGTTCCTTTTACCTTAATTTTCTTCACTCTGTTCTCTGCTCTGTTTTCTGTTCTGTTTTCCTCTGTTTTTTCATCTACTTTGCGTAGCGATTTTCATGCTTTGGTCAGTCTTAAACAAGGTTTTCAATTCTCAAACCAAGTTCTAAACACATGGGAAGATTCAAATTTCACTTCAATTTGTTCATGGACTGGAATTCAATGCCGGGAGAATCGAATAGTCTCTCTCGACTTAACCGATTTGAATCTGTTTGGCTCTGTTTCACCTTCAATTACATCACTTGACAAACTCACACACCTTTCTCTAGCAGGAAACAACTTCACAGGAACCATTCACCTCACAAACTTAACCAACCTTGAGTTTCTAAACATCTCCAACAACATGTTCAATGGTCACATGGATCATTGGAGCTTCTCCACCATGCAAAACCTTCAAGTCCTTGATGTCTACAACAACAATTTCACTTCATTGCTTCCATTAGGCCTTCTTACCTTGAACCAAACCCTCAAACACTTGGATCTTGGTGGTAACTTTTTCTTCGGCGAAATCCCGAAAACCTTTGGAGAATTTAGTTCTCTTGAGTATCTTTCACTGGCTGGAAATGACATCACAGGAAAAATCCCTGGTGAGCTAGGAAATCTGAGTAACTTGAAGGAAATCTACTTGGGCTATTACAATTCCTTTGAAGGTGGAATTCCAATCGAATTCGGAAAGTTAACAAACCTTGTTCATATGGATCTTTCAAGCTGTGATTTGAATGGTTCCATCCCAAAAGAGTTAGGTGAATTGAGAAAACTCAACACACTTTACTTGCATATAAACCAGCTTTCGGGTTCGTTACCAAAACATCTTGGTAACTTAACAGAACTTCTCTACCTCGATCTTTCGAGCAATGTACTCACCGGAGAAATTCCGTTCGAGTTCATGAATCTCAAGAATCTCAAGCTGATCAACCTTTTTTTAAACAGGTTTCATGGTTCAATACCGGAGTACATTGCGGATTTTCCTGATTTAGAAACTCTTGGTTTGTGGATGAACAATTTCACTGGCGAAATTCCATATAAACTCGGTCTCAACGGGAAGATTCGTGTCCTTGATTTATCGTCTAATAAACTCACTGGTGTTATTCCGCCGAATCTTTGTTCTTCAAACCAGCTTAACATTTTGATTCTTCTTAACAATTTTCTGTTTGGTCCTATACCAGAAGGTCTAGGAACATGTTATAGTCTCACTAGAGTGAGATTAGGAGAGAATTACCTTAATGGTAGTATTCCAAATGGTTTTCTTTATCTTCCTAAGCTAAATTTAGCTGAGTTGAAGAACAATTACTTGTCTGGAACATTGTTAGAAAATGGTAACGGTTCGTCTTTTTCTCAGTCGAAGCCTGTTTGTTTAGAACAGCTTGACTTGTCAAACAATGCTTTGTCTGGTCCTTTACCGCATTCGCTCTCGAATTTCACTTCGCTTCAAATACTTTTCCTTGGTGGAAACCAGTTTTCGGGTCCGATTCCAAGTTCCATTGGAGGACTTAACCAAGTGTTGAAGCTTGACCTTAGCAGAAACTTGTTATCGGGTGAAATTCCGCCCGATATCGGAAACTGTGTTCATCTTACCTATCTTGACATGAGCCAGAATAATCTTTCTGGTTCAATTCCACCGTTGTTTTCGAATATTCGTATTTTGAATTACTTGAACTTGTCCAGAAACCATTTGAACCAAAGCATACCAAAGTCAATAGGGACAATGAAAAGCCTCACTGTTGCTGATTTCTCCTTCAACGAATTCTCCGGTAAATTGCCCGAATCAGGCCAGTTTTCGTTCTTTAACGCGTCTGCGTTCGCAGGGAATCCTAAACTATGTGGCTCTCTATTGAACAATCCATGTAAATTGACAGGAATGAAGTCCACACCAGGAAAAAAAAGCAATGCAGATTTCAAGCTGATATTCGCGCTTGGGCTATTGATGTGTTCGTTAGTCTTTGTAATCGCAGCGATTCTAAAAGCCAAGTCATTCAAAAAGAATGGCCCTGGTTCTTGGAAGATGACTGCTTTCAAAAAGCTCGAGTTCACCGTTTCAGACATCCTTGAATGCGTGAAAGACGGTAACGTGATAGGAAGAGGAGGCGCAGGGATAGTTTACCACGGAAAAATGCCGAATGGAGTAGAAATAGCAGTAAAAAAACTACTCGGGTTCGGCGCAAATAGCCACGATCATGGTTTTAGAGCTGAAATTCAAACACTTGGAAACATAAGACACAGAAACATTGTGAGACTACTTGCATTCTGTTCAAACAAAGAAACAAATCTTCTTGTGTATGAATACATGAGAAATGGGAGCTTAGGTGAAGCATTGCATGGAAAAAAAGGCGCATTCTTGAGTTGGAACTTTCGGTACAAGATATCTATTGATTCTGCTAAAGGACTATGCTATCTTCACCATGATTGTTCTCCATTGATCCTACACAGAGATGTGAAATCTAACAACATTTTGTTGAGTTCGAATTTTGAAGCGCATGTTGCTGATTTCGGGCTAGCAAAATTCTTGGTTGATGGTGCTGCTTCCGAATGCATGTCTTCAATTGCAGGATCATATGGTTACATTGCACCAGAATATGCATACACATTAAGAGTGGATGAAAAAAGTGATGTTTATAGTTTTGGAGTAGTTCTACTAGAGCTACTAACTGGTAAAAAACCAGTTGGTGATTTTGGAGAAGGAGTAGATCTTGTACAATGGTGCAAAAAAGCAACAAATGGAAGAAGAGAACAAGTCATCAACATAATCGATTCAAGACTCATGGTAGTGCCAAGAGAAGAAGCCATGCACATGTTCTTCATTGCAATGCTATGTTTAGAAGAAAACAGTGTTCAAAGACCAACCATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCAAGACAATCACAACAACAAGAACATCAACAATCTTCTTCTTCATGTTCTTCTAGTGTTAATCCACCAAGCAAAAAGTTAATTCAGAATCATAAATTGCCTTGTTCTCCTACTTTTAAACATGATCTTTTGGTTTAA 3051 0.3894 MVPFTLIFFTLFSALFSVLFSSVFSSTLRSDFHALVSLKQGFQFSNQVLNTWEDSNFTSICSWTGIQCRENRIVSLDLTDLNLFGSVSPSITSLDKLTHLSLAGNNFTGTIHLTNLTNLEFLNISNNMFNGHMDHWSFSTMQNLQVLDVYNNNFTSLLPLGLLTLNQTLKHLDLGGNFFFGEIPKTFGEFSSLEYLSLAGNDITGKIPGELGNLSNLKEIYLGYYNSFEGGIPIEFGKLTNLVHMDLSSCDLNGSIPKELGELRKLNTLYLHINQLSGSLPKHLGNLTELLYLDLSSNVLTGEIPFEFMNLKNLKLINLFLNRFHGSIPEYIADFPDLETLGLWMNNFTGEIPYKLGLNGKIRVLDLSSNKLTGVIPPNLCSSNQLNILILLNNFLFGPIPEGLGTCYSLTRVRLGENYLNGSIPNGFLYLPKLNLAELKNNYLSGTLLENGNGSSFSQSKPVCLEQLDLSNNALSGPLPHSLSNFTSLQILFLGGNQFSGPIPSSIGGLNQVLKLDLSRNLLSGEIPPDIGNCVHLTYLDMSQNNLSGSIPPLFSNIRILNYLNLSRNHLNQSIPKSIGTMKSLTVADFSFNEFSGKLPESGQFSFFNASAFAGNPKLCGSLLNNPCKLTGMKSTPGKKSNADFKLIFALGLLMCSLVFVIAAILKAKSFKKNGPGSWKMTAFKKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGAFLSWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGRREQVINIIDSRLMVVPREEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRQSQQQEHQQSSSSCSSSVNPPSKKLIQNHKLPCSPTFKHDLLV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1163g00002 1016 SUPERFAMILY Protein kinase-like (PK-like) 689 968 IPR011009 -
Vivi1163g00002 1016 Gene3D Ribonuclease Inhibitor 363 634 IPR032675 -
Vivi1163g00002 1016 Pfam Protein tyrosine and serine/threonine kinase 701 968 IPR001245 GO:0004672|GO:0006468
Vivi1163g00002 1016 Gene3D Ribonuclease Inhibitor 286 362 IPR032675 -
Vivi1163g00002 1016 SUPERFAMILY L domain-like 361 621 - -
Vivi1163g00002 1016 Gene3D Transferase(Phosphotransferase) domain 1 775 993 - -
Vivi1163g00002 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 667 774 - -
Vivi1163g00002 1016 Pfam Leucine Rich Repeat 361 381 IPR001611 GO:0005515
Vivi1163g00002 1016 Pfam Leucine Rich Repeat 536 557 IPR001611 GO:0005515
Vivi1163g00002 1016 ProSiteProfiles Protein kinase domain profile. 698 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1163g00002 1016 Gene3D Phosphorylase Kinase; domain 1 663 774 - -
Vivi1163g00002 1016 FunFam Leucine-rich repeat receptor-like kinase 30 137 - -
Vivi1163g00002 1016 SMART serkin_6 698 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1163g00002 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Vivi1163g00002 1016 MobiDBLite consensus disorder prediction 971 997 - -
Vivi1163g00002 1016 Gene3D Ribonuclease Inhibitor 137 225 IPR032675 -
Vivi1163g00002 1016 Pfam Leucine rich repeat 168 224 IPR001611 GO:0005515
Vivi1163g00002 1016 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 225 969 - -
Vivi1163g00002 1016 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vivi1163g00002 1016 Gene3D Ribonuclease Inhibitor 30 136 IPR032675 -
Vivi1163g00002 1016 Gene3D Ribonuclease Inhibitor 226 285 IPR032675 -
Vivi1163g00002 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 339 632 - -
Vivi1163g00002 1016 MobiDBLite consensus disorder prediction 971 1004 - -
Vivi1163g00002 1016 ProSiteProfiles Leucine-rich repeat profile. 143 164 IPR001611 GO:0005515
Vivi1163g00002 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 985 - -
Vivi1163g00002 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 227 332 - -
Vivi1163g00002 1016 SUPERFAMILY RNI-like 75 445 - -
Vivi1163g00002 1016 SMART LRR_typ_2 141 164 IPR003591 -
Vivi1163g00002 1016 SMART LRR_typ_2 510 534 IPR003591 -
Vivi1163g00002 1016 SMART LRR_typ_2 558 582 IPR003591 -
Vivi1163g00002 1016 SMART LRR_typ_2 116 140 IPR003591 -
Vivi1163g00002 1016 SMART LRR_typ_2 360 383 IPR003591 -
Vivi1163g00002 1016 SMART LRR_typ_2 190 214 IPR003591 -
Vivi1163g00002 1016 SMART LRR_typ_2 263 287 IPR003591 -
Vivi1163g00002 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 138 226 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1163g00002 30 995 Receptor kinase-like Gene Family AT5G65700 56.633 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1163g00002 PK_Tyr_Ser-Thr 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1163g00002 - - qsa:O6P43_031479 1486.09