Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1151g00003 ATGTTGAACATAGCAATCATATCCATGGCTCGTGCAACCAATGCTTCCTCCCCTATCTACCACCACAAACTCTTCAACTTCTCCTCTACCCATTCACCCATTCCCCACACCCTCAACTTCCCACTCACAACAACAACCAGTTCCTCAAAACCCCTCATTCTAAATCCCCAGTTACTCAACCCTCCTTCTTTCAAACTCCACCCTCTTCACCCACCATCATTTTCCTTACATCAATTCGAATATACTGAAGAAGAAGAAGAAAATGATCCTAAAACTGAAACTAAAACCTCACCGAATTCAGACCCAAAATCGTCGCAATCAAAGAGACTCTTTGTTGGTAACTTGCCATTTTCATTATCTTCTTCCCAATTGGCTCAACTCTTTGTAGAAGCCGGAAACGTTGTGTCTGTAGAGATTGCGCATGATGACATTGGGGATAGAAGCAGAGGATTTGCGTTTGTTACAATGGGGAGCGTGGAGGATGCTGAAGAAGCAATTCGAATGTTTGAGGGCACTAATGTTGGAGGTAGAGTTATTAAGGTAAACTTCCCAGAAGTGCCTAGAGTAGGCAAAAGTGCAAAAATGGGCTCAAACTATAGAGGTTATGTAGACAGCCCTCACAAAATCTATGCCGGAAACCTCGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTAAGCAGAAAGGCTTACTGAGTGCCAAGGTTATCTATGAAAGGAACACCGGAAAATCTCGCGGATATGGGTTTGTTTCGTTCGAAACTGCTGAGGATGTAAAAGCTGCTTTGATTGCTATGAACGGCGTGGAGGTACAAGGCCGGCCTTTACGAATGAAATTGGCTCTTGATAATAAGAAGCCTTTATCGCCTCCGGTAATTGATTAA 891 0.4366 MLNIAIISMARATNASSPIYHHKLFNFSSTHSPIPHTLNFPLTTTTSSSKPLILNPQLLNPPSFKLHPLHPPSFSLHQFEYTEEEEENDPKTETKTSPNSDPKSSQSKRLFVGNLPFSLSSSQLAQLFVEAGNVVSVEIAHDDIGDRSRGFAFVTMGSVEDAEEAIRMFEGTNVGGRVIKVNFPEVPRVGKSAKMGSNYRGYVDSPHKIYAGNLGWDMTSQDLREAFAKQKGLLSAKVIYERNTGKSRGYGFVSFETAEDVKAALIAMNGVEVQGRPLRMKLALDNKKPLSPPVID 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1151g00003 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Vivi1151g00003 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Vivi1151g00003 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Vivi1151g00003 296 FunFam 33 kDa ribonucleoprotein, chloroplastic 189 293 - -
Vivi1151g00003 296 SMART rrm2_1 208 281 IPR003954 GO:0003676
Vivi1151g00003 296 SMART rrm2_1 109 182 IPR003954 GO:0003676
Vivi1151g00003 296 Gene3D - 192 290 IPR012677 -
Vivi1151g00003 296 CDD RRM2_NsCP33_like 208 283 - -
Vivi1151g00003 296 SMART rrm1_1 109 182 IPR000504 GO:0003723
Vivi1151g00003 296 SMART rrm1_1 208 281 IPR000504 GO:0003723
Vivi1151g00003 296 SUPERFAMILY RNA-binding domain, RBD 204 288 IPR035979 GO:0003676
Vivi1151g00003 296 SUPERFAMILY RNA-binding domain, RBD 96 196 IPR035979 GO:0003676
Vivi1151g00003 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Vivi1151g00003 296 Gene3D - 76 191 IPR012677 -
Vivi1151g00003 296 PANTHER OS02G0815200 PROTEIN 48 286 - -
Vivi1151g00003 296 MobiDBLite consensus disorder prediction 81 108 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1151g00003 110 283 Eukaryotic Initiation Factors Gene Family AT2G23350 30.556 2.01e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1151g00003 - - psat:127093492 439.499