Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1149g00025 ATGGAAGGTCTTTCAGCTCCACCTGGTTTTGTATCTTTAACATCTTTTTTCTTGAAAAAGGATGACAAGATTGAGAAAACCAGTCAGTCCAACCCAATCCCCACGAAGACTAAACCTGAGATGGATGACAATACTTCATATAACCCGATTTATGCACATCGGCCATGGATAGTATCGGAGAAGGACAGGTGCAAATCTGAGGAATTTTGCGCTGAGCATCGTCCTATGGTTAAGAATCCCCATACAAATTCTTCTCGTCCAAAAGGAACTGTATATGGATGTCCAAACTGCAGTAATTGTTTAAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAGAAGAGAAGTTCTGGAAGATGCTCCTATTTTCCGTCCAACAGAAGAGGAATTCAAAGATACACTTGGATACATCGCAAGCATACGTTCCCGAGCAGAACCATATGGAATATGCCGTATTGTCCCTCCTAGGAGTTGGAAACTGTCATGTACTCTTCAAAAAGAGAATGTATGGGAAAGCTCTGAATTTGTTGCTCAAACTCAGCGAATTGATGGGCACCAAGTTCAGCTTGCACAAGAAAGTATGGCTAGCTCTCATGATACTACCGAAAGCAAGAGAAGAAAAGTGATTAAAGAAGAGATGGACTCTCATCTTGGTAATAGAAGCATCTGCACCTCAAATAACGGAAATATTGAAGGCTGTGACGGTAAGCCTGAATCCGGTCCGAAATTCACTCTCAAAATGTTTAAGAAATTGGCAGATGATTTCAAGATCCAATACTTCAACTGCAAGGATGAGATTCAGATTATGGGTTCTGATAAAAATTCCGCCATTCATCAACAGCAAAGGGAGCCATCTGTTGGGGATATTGAGGGTGAGTACGGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTATGTGGTAATACTTTGGAGGCCGGAGATTTTAGCAGTGGATTTCCATTTCCAACTGTTTCTGACCCTGAATATATGAAATCTGGATGGAACTTAAATAATATGATTTCACTCCCAGGCTCTCTTCTTTCTTTTGAAAACCCTGAAGCTGCACGTAAATTTTCCCCTCGGGTACATGTGGGAATGTGCTTTTCTCCACTTAAATGGAGAGTTGAAGAGCACCAATTGTACTCATTATGTTACATGCATTTGGGTGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATCTGCTGATCACTTTGAAACAGTTTGGAAGAAGTATCTCGGAGATATGAATGCAGGAAAACCTGATTTGCATGATGATCTGACTATGCAGTTATCCTGCTCAGTATTGAAGGCAGAGGGTATACCGGTATATCGTTGTATTCAGTATCCTCGTGAATTTGTTCTTGTCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCGGCAAACTTTGCTCCTCTCGAGTGGCTGCCTCATGGACAGAATGTTGTAGAGCAATATTGTGAACAGAAGAGAAAGACATCAATTTCATTCGATAAGTTGTTACTGGGAGCAGCAAGGGAAACTGTGAGAGCCCGCTGGGAAATTGATATACTTATGAAGAACACGCCCGAGAACGTAATGTGTAGAGACGCATATCAAAGAAATGGGATCTTAAAAGAATCTTTGAATTCTCGCATCAGTAGTGAGAATTTGAAGAGGAAATTTATTTCTACTTCTTTCAAATCACAAAAAATGGATGAAAGCTTTGACGCAAGTTGTAAAAGGGAATGTAGCATATGTCTGCGTGATTTATTCCTGTCAGCTGTTGGTTGTTCATGTTCAGATGACAAGTTTGTGTGTCTTGATCATGCAAGAAAGCTTTGTTCTTGTCCTTGGACAGACAAAATTCTCCTCTACCGTTACGCAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGCATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAAGATCTTGGTTTAACTGTGCGCTCAGTTGCCTCCAAGAGATCTAAACAAACCCCAGAGAAAGTAAATGGTTCAGTAGATTCGTCGAAACTACCTATATCACAGTCCACGGTGGATCCATACAACAAGTGGAAACAGCTTAAATCGCAAGGAACACCAAATGCTTTGGCAGGCAAACAGAGCGAAACGGCCTTCCAAGCCAAGCAGTCCCATGGTAGCGCTCACAGTAATTCGAATGTCATTCATCCAGAAAAGAACACAACTGTACTTCATTCAGCAATATCAAATGAGGTCAAACCTAAAGAGAAAACGGCGTTGCACAATTCTGCTGCAAAAAGAATTGGCGAAGGAAGTAATTCATCTGAGATCAAACCTGATAGCAATGCAATTGGTGATAAGCTCACAATTTCGAAGAAAGTAGAAGAACCAAAAGCTTCTGAACCAGGCTCGGGTTTCTTGTCTTTTCTACAAGACGACATTTTCGATGAAGTTTTATCTGATAGTACAAGTTCTTCTAGTTCTTCGGAAACTGACTAG 2499 0.4106 MEGLSAPPGFVSLTSFFLKKDDKIEKTSQSNPIPTKTKPEMDDNTSYNPIYAHRPWIVSEKDRCKSEEFCAEHRPMVKNPHTNSSRPKGTVYGCPNCSNCLKVTARWHPEDARREVLEDAPIFRPTEEEFKDTLGYIASIRSRAEPYGICRIVPPRSWKLSCTLQKENVWESSEFVAQTQRIDGHQVQLAQESMASSHDTTESKRRKVIKEEMDSHLGNRSICTSNNGNIEGCDGKPESGPKFTLKMFKKLADDFKIQYFNCKDEIQIMGSDKNSAIHQQQREPSVGDIEGEYGRIVQNPTEEIEVLCGNTLEAGDFSSGFPFPTVSDPEYMKSGWNLNNMISLPGSLLSFENPEAARKFSPRVHVGMCFSPLKWRVEEHQLYSLCYMHLGEPKVWYSVPGRSADHFETVWKKYLGDMNAGKPDLHDDLTMQLSCSVLKAEGIPVYRCIQYPREFVLVFPGAYHSGFDCGFNCSEAANFAPLEWLPHGQNVVEQYCEQKRKTSISFDKLLLGAARETVRARWEIDILMKNTPENVMCRDAYQRNGILKESLNSRISSENLKRKFISTSFKSQKMDESFDASCKRECSICLRDLFLSAVGCSCSDDKFVCLDHARKLCSCPWTDKILLYRYAISELEVLHQALHGKLSAVYKWAKEDLGLTVRSVASKRSKQTPEKVNGSVDSSKLPISQSTVDPYNKWKQLKSQGTPNALAGKQSETAFQAKQSHGSAHSNSNVIHPEKNTTVLHSAISNEVKPKEKTALHNSAAKRIGEGSNSSEIKPDSNAIGDKLTISKKVEEPKASEPGSGFLSFLQDDIFDEVLSDSTSSSSSSETD 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1149g00025 832 ProSiteProfiles JmjN domain profile. 120 161 IPR003349 -
Vivi1149g00025 832 MobiDBLite consensus disorder prediction 666 688 - -
Vivi1149g00025 832 Pfam C5HC2 zinc finger 586 636 IPR004198 -
Vivi1149g00025 832 SMART JmjN_1 119 160 IPR003349 -
Vivi1149g00025 832 Pfam JmjC domain, hydroxylase 364 479 IPR003347 -
Vivi1149g00025 832 PANTHER LYSINE-SPECIFIC DEMETHYLASE 114 758 - -
Vivi1149g00025 832 SMART cupin_9 330 496 IPR003347 -
Vivi1149g00025 832 MobiDBLite consensus disorder prediction 752 806 - -
Vivi1149g00025 832 SUPERFAMILY Clavaminate synthase-like 237 523 - -
Vivi1149g00025 832 Gene3D Cupin 114 502 - -
Vivi1149g00025 832 Pfam jmjN domain 121 154 IPR003349 -
Vivi1149g00025 832 ProSiteProfiles JmjC domain profile. 333 496 IPR003347 -
Vivi1149g00025 832 MobiDBLite consensus disorder prediction 24 45 - -
Vivi1149g00025 832 MobiDBLite consensus disorder prediction 28 44 - -
Vivi1149g00025 832 MobiDBLite consensus disorder prediction 716 737 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1149g00025 5 666 JUMONJI Transcription Factor Family AT1G08620 47.085 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1149g00025 JmjC 4.3e-33 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1149g00025 K11446 - gmx:100804864 981.859