Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1149g00019 ATGCATTTAGGTCAAATGGATCTAGCTTCAGCAAAATGTGTAATCAACAGCATTTCTCGATTCATTCATTTAGTTTCGTGCCAAACAGTGAAGCCTATCCCTCTTCAGAAGAACTGTACTAATATGGTTTCCGTTTTGCGGTGTTTGAAACCGGTGCTTGATGATGTTTTTGATTACAAAGTTCCTTTGGATGAGAATTTGTATAGAGAATGTGAAGAGTTGGACAGGCAGGTTAATGAAGCTAGGGAGTTTGTTGAAAATTGGAGTCCGAAGACAAGCAGGGTTCATAGTGTAAGCAGTCAGTTATTATTTGTACCCAAAGTTCTTCAAAGTGGAGAACTGTTAATAATGTTACAGGACACTGCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGCACCATATGCAGGAACTGAAGTGTCTTAAGAAGGAATCAACATCGGTCTATATAGAAGAAGTGCTGAGAAATCAAAAGGATAATACTAAGCCTAGCTATGAACGTCAAAGGGAAATTATAGAGTTACTTAATTTGACGTCAAACCAGGATCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATAAAATTAACCAAATTGTGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACTAAATGCCCTGAAGTCAAAAGTGATGTGTCAGTCCCAACGTACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATCAGAGACAGTCCATCCAAACTTGGCTTGATAGCGGGCTGAATGTTTGTCCCAAGACTCATCAGACACTTAACCATGCAATTCTAATTCCCAATTATACGGTTAAAGCTATGATAGCAAGTTGGTGTGAAGAAAATAACATCGAACTTCCCCATCATTCAAAGCAGGGTAATTCTACCCAAAGTTCACCCCCCAAAGATTATTTATTGCATCAAGATTTAAATCGACTCTGTAGTTTTGGGTCTTCGCATAGCAGCAATTCCAATTCAAAATCATCTCTTCAAACCGGAAATGCATTTGAAAAGCAAAAGGGTGATGAGTTCTCCAGATTAAGCGGTGAAGGTGAGACAGAAATGTTTGAGCAACAATCTCAGGCTCATTCATGTAGTCATAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACCGTCGGTTTCAAAAAAGGTGTCACAGATATCAAATAAGCAATCAAATGTGATGTCGTCTGGAGAAATTAATAATAATGTGTTTCTTGCTTATCCTGCAAATGAAGATGTTGCGAATTTTCCAACGGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAGCAACAACGTCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTGCAGGAGAAGCATCAAAACGTTCCAACGGTGTCAGGGGTATCGACTAAGCATCAAAGTGTGCTGTTGTCAGGAGAAACAAAGAATAGTGTGTTTCCTGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACAAGAGCAATTTCAAAGCCCTGTATCAAAAAACGCAAAGACGCCAGAGATATCCAATAAACATCAAAATGTGCAGGAGAAGCATCAACATGTTCCAACGGTGTCAGGGGTATCAAACAAGCAACAAAATGTACAGGAGAAGCATCAAAATGTTCCAACGATGTCAGGGGTATCAAATAAGCAAGAAAATGTACAGGAGAAGCATCAAAATGTTCCATTGGTGTCAGGGTTGTCAAATAAACAACAAAATGTACAGGAGAAGCAGGAAAATGCACAGGAGAAGCATCCAAATGTTCCAGTGGTGTCAAGGATATCAAATAAGCATCAAAATGTGCTGGAGAACCATCAAAATATTCCAACAGGGACATCAAATAAGCAACAAAATGTGCTTCTGTCTGGAGAAATTAGTAATAGTGTGTTTCCTGCTTCTCCTGTAAATAAGGAAGTTGAAAATTTTCCAACGGTGTCGCGAGAGCAATTTCAAAGCCCTGGATCAAGAAATGCAATGACGCCGGAGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGGTAGGGATATCAAATAAGCCTCAAAATGTGTCAGGGATATCAAATCAGCATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATACGAATCAAAAAGTGCTTCTGTCTGGAGGAATTAATAATAATGTGTTTCCCGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACGAGAGCAATTTCAGAGCCCTGGATCAAAAAATCATACGACAGAGAATGAAAATAATTACAATAACAATATTGTTTTTACTAGCCATTCAAGTTCAGAAGATGATGTCCATTCTGTTTCCAGCACAGAATCTGATAAATTGACCACCGCACATGTCGGTAAGTTGATTGAAGATCTACAAAGTCAATCAAAAGAAACACAAGCTACTGCTGCCGAAGAATTGCGGCTTCTTACGAAGCATAACATGGAAAACCGTATCATTGTTGGGAAATGTGGTGCCATTATGCATTTACTTCCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAATTTATCGATCAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGTCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAATTCGGCTGCAACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGATGAAGATTGGTCGCTCTGGTGCTGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTATTAGAGGAAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTAAGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCAACAATCCCAGAGGGTCGAATAGAAATTGTACGTGAAAGGGGAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCAGAGGGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTTAGCCTTCATAGCCCTAAGTTTTGCACCCTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGCACGCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAGCGTGAAGGAGCTAACGGGAGGGGAAAATCATGA 3414 0.394 MHLGQMDLASAKCVINSISRFIHLVSCQTVKPIPLQKNCTNMVSVLRCLKPVLDDVFDYKVPLDENLYRECEELDRQVNEAREFVENWSPKTSRVHSVSSQLLFVPKVLQSGELLIMLQDTALRICHIIDRFHKLTSSTSVLNNLQHHMQELKCLKKESTSVYIEEVLRNQKDNTKPSYERQREIIELLNLTSNQDLLKESIAVEKERLNAEVNKTKGELDKINQIVNLVCSLRDYAMKTKCPEVKSDVSVPTYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDSGLNVCPKTHQTLNHAILIPNYTVKAMIASWCEENNIELPHHSKQGNSTQSSPPKDYLLHQDLNRLCSFGSSHSSNSNSKSSLQTGNAFEKQKGDEFSRLSGEGETEMFEQQSQAHSCSHSRSESFSSSISSTDYVPSVSKKVSQISNKQSNVMSSGEINNNVFLAYPANEDVANFPTVSQEQFQSPGSKATTSGISNKHQNVQEKHQNVQEKHQNVPTVSGVSTKHQSVLLSGETKNSVFPASPAYKEFGNFPTASQEQFQSPVSKNAKTPEISNKHQNVQEKHQHVPTVSGVSNKQQNVQEKHQNVPTMSGVSNKQENVQEKHQNVPLVSGLSNKQQNVQEKQENAQEKHPNVPVVSRISNKHQNVLENHQNIPTGTSNKQQNVLLSGEISNSVFPASPVNKEVENFPTVSREQFQSPGSRNAMTPEISNKHQNVQEKHQNIPTVVGISNKPQNVSGISNQHQNVQEKHQNVPTVSGISNTNQKVLLSGGINNNVFPASPAYKEFGNFPTASREQFQSPGSKNHTTENENNYNNNIVFTSHSSSEDDVHSVSSTESDKLTTAHVGKLIEDLQSQSKETQATAAEELRLLTKHNMENRIIVGKCGAIMHLLPLLYSDMKITQEHAVTAILNLSINEDNKTLIMEAGVIEPLIHVLKNGNNGAKENSAATLFSLSVPENNKMKIGRSGAVKALVELLASGTIRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERGIPLLVELVESGSQRGKENAASIVLQLSLHSPKFCTLILQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQREGANGRGKS 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1149g00019 1137 SMART Ubox_2 254 317 IPR003613 GO:0004842|GO:0016567
Vivi1149g00019 1137 Coils Coil 617 637 - -
Vivi1149g00019 1137 SUPERFAMILY ARM repeat 852 1124 IPR016024 -
Vivi1149g00019 1137 CDD RING-Ubox_PUB 252 304 IPR045210 -
Vivi1149g00019 1137 MobiDBLite consensus disorder prediction 356 377 - -
Vivi1149g00019 1137 Coils Coil 199 226 - -
Vivi1149g00019 1137 ProSiteProfiles U-box domain profile. 250 324 IPR003613 GO:0004842|GO:0016567
Vivi1149g00019 1137 MobiDBLite consensus disorder prediction 799 825 - -
Vivi1149g00019 1137 SMART arm_5 1004 1043 IPR000225 GO:0005515
Vivi1149g00019 1137 SMART arm_5 963 1003 IPR000225 GO:0005515
Vivi1149g00019 1137 SMART arm_5 922 962 IPR000225 GO:0005515
Vivi1149g00019 1137 SMART arm_5 1044 1084 IPR000225 GO:0005515
Vivi1149g00019 1137 SMART arm_5 881 921 IPR000225 GO:0005515
Vivi1149g00019 1137 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1015 1056 IPR000225 GO:0005515
Vivi1149g00019 1137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 325 IPR013083 -
Vivi1149g00019 1137 PANTHER U BOX DOMAIN-CONTAINING 36 1125 - -
Vivi1149g00019 1137 FunFam RING-type E3 ubiquitin transferase 836 1130 - -
Vivi1149g00019 1137 SUPERFAMILY RING/U-box 249 327 - -
Vivi1149g00019 1137 Gene3D - 831 1132 IPR011989 -
Vivi1149g00019 1137 MobiDBLite consensus disorder prediction 391 420 - -
Vivi1149g00019 1137 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 974 1016 IPR000225 GO:0005515
Vivi1149g00019 1137 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 892 934 IPR000225 GO:0005515
Vivi1149g00019 1137 MobiDBLite consensus disorder prediction 356 420 - -
Vivi1149g00019 1137 Pfam Armadillo/beta-catenin-like repeat 922 961 IPR000225 GO:0005515
Vivi1149g00019 1137 Pfam Armadillo/beta-catenin-like repeat 965 1002 IPR000225 GO:0005515
Vivi1149g00019 1137 Pfam U-box domain 251 322 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1149g00019 211 339 U-box Gene Family AT2G23140 46.512 1.83e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1149g00019 - - psat:127126040 1832.38