Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1149g00017 ATGCATTTAGGTCAAATGGATCTAGCTTCAGCAAAATGTGTAATCAACAGCATTTCTCGATTCATTCATTTAGTTTCGTGCCAAACAGTGAAGCCTATCCCTCTTCAGAAGAACTGTACTAATATGGTTTCCGTTTTGCGGTGTTTGAAACCGGTGCTTGATGATGTTTTTGATTACAAAGTTCCTTTGGATGAGAATTTGTATAGAGAATGTGAAGAGTTGGACAGGCAGGTTAATGAAGCTAGGGAGTTTGTTGAAAATTGGAGTCCGAAGACAAGCAGGGTTCATAGTGTAAGCAGTCAGTTATTATTTGTACCCAAAGTTCTTCAAAGTGGAGAACTGTTAATAATGTTACAGGACACTGCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGGAACTGAAGTGTCTTAAGAAGGAATCAACATCGGTCTATATAGAAGAAGTGCTGAGAAATCAAAAGGATAATACTAAGCCTAGCTATGAACGTCAAAGGGAAATTATAGAGTTACTTAATTTGACGTCAAACCAGGATCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATAAAATTAACCAAATTGTGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACTAAATGCCCTGAAGTCAAAAGTGATGTGTCAGTCCCAACGTACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATCAGAGACAGTCCATCCAAACTTGGCTTGATAGCGGGCTGAATGTTTGTCCCAAGACTCATCAGACACTTAACCATGCAATTCTAATTCCCAATTATACGGTTAAAGCTATGATAGCAAGTTGGTGTGAAGAAAATAACATCGAACTTCCCCATCATTCAAAGCAGGGTAATTCTACCCAAAGTTCACCCCCCAAAGATTATTTATTGCATCAAGATTTAAATCGACTCTGTAGTTTTGGGTCTTCGCATAGCAGCAATTCCAATTCAAAATCATCTCTTCAAACCGGAAATGCATTTGAAAAGCAAAAGGGTGATGAGTTCTCCAGATTAAGCGGTGAAGGTGAGACAGAAATGTTTGAGCAACAATCTCAGGCTCATTCATGTAGTCATAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACCGTCGGTTTCAAAAAAGGTGTCACAGATATCAAATAAGCAATCAAATGTGATGTCGTCTGGAGAAATTAATAATAATGTGTTTCTTGCTTATCCTGCAAATGAAGATGTTGCGAATTTTCCAACGGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAGCAACAACGTCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTGCAGGAGAAGCATCAAAACGTTCCAACGGTGTCAGGGGTATCGACTAAGCATCAAAGTGTGCTGTTGTCAGGAGAAACAAAGAATAGTGTGTTTCCTGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACAAGAGCAATTTCAAAGCCCTGTATCAAAAAACGCAAAGACGCCAGAGATATCCAATAAACATCAAAATGTGCAGGAGAAGCATCAACATGTTCCAACGGTGTCAGGGGTATCAAACAAGCAACAAAATGTACAGGAGAAGCATCAAAATGTTCCAACGATGTCAGGGGTATCAAATAAGCAAGAAAATGTACAGGAGAAGCATCAAAATGTTCCATTGGTGTCAGGGTTGTCAAATAAACAACAAAATGTACAGGAGAAGCAGGAAAATGCACAGGAGAAGCATCCAAATGTTCCAGTGGTGTCAAGGATATCAAATAAGCATCAAAATGTGCTGGAGAACCATCAAAATATTCCAACAGGGACATCAAATAAGCAACAAAATGTGCTTCTGTCTGGAGAAATTAGTAATAGTGTGTTTCCTGCTTCTCCTGTAAATAAGGAAGTTGAAAATTTTCCAACGGTGTCGCGAGAGCAATTTCAAAGCCCTGGATCAAGAAATGCAATGACGCCGGAGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGGTAGGGATATCAAATAAGCCTCAAAATGTGTCAGGGATATCAAATCAGCATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATACGAATCAAAAAGTGCTTCTGTCTGGAGGAATTAATAATAATGTGTTTCCCGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGCATCACGAGAGCAATTTCAGAGCCCTGGATCAAAAAATCATACGACAGAGAATGAAAATAATTACAATAACAATATTGTTTTTACTAGCCATTCAAGTTCAGAAGATGATGTCCATTCTGTTTCCAGCACAGAATCTGATAAATTGACCACCGCACATGTCGGTAAGTTGATTGAAGATCTACAAAGTCAATCAAAAGAAACACAAGCTACTGCTGCCGAAGAATTGCGGCTTCTTACGAAGCATAACATGGAAAACCGTATCATTGTTGGGAAATGTGGTGCCATTATGCATTTACTTCCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAATTTATCGATCAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGTCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAATTCGGCTGCAACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGATGAAGATTGGTCGCTCTGGTGCTGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTATTAGAGGAAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTAAGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCAACAATCCCAGAGGGTCGAATAGAAATTGTACGTGAAAGGGGAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCAGAGGGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTTAGCCTTCATAGCCCTAAGTTTTGCACCCTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGCACGCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAGCGTGAAGGAGCTAACGGGAGGGGAAAATCATGA 3402 0.3936 MHLGQMDLASAKCVINSISRFIHLVSCQTVKPIPLQKNCTNMVSVLRCLKPVLDDVFDYKVPLDENLYRECEELDRQVNEAREFVENWSPKTSRVHSVSSQLLFVPKVLQSGELLIMLQDTALRICHIIDRFHKLTSSTSVLNNLQELKCLKKESTSVYIEEVLRNQKDNTKPSYERQREIIELLNLTSNQDLLKESIAVEKERLNAEVNKTKGELDKINQIVNLVCSLRDYAMKTKCPEVKSDVSVPTYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDSGLNVCPKTHQTLNHAILIPNYTVKAMIASWCEENNIELPHHSKQGNSTQSSPPKDYLLHQDLNRLCSFGSSHSSNSNSKSSLQTGNAFEKQKGDEFSRLSGEGETEMFEQQSQAHSCSHSRSESFSSSISSTDYVPSVSKKVSQISNKQSNVMSSGEINNNVFLAYPANEDVANFPTVSQEQFQSPGSKATTSGISNKHQNVQEKHQNVQEKHQNVPTVSGVSTKHQSVLLSGETKNSVFPASPAYKEFGNFPTASQEQFQSPVSKNAKTPEISNKHQNVQEKHQHVPTVSGVSNKQQNVQEKHQNVPTMSGVSNKQENVQEKHQNVPLVSGLSNKQQNVQEKQENAQEKHPNVPVVSRISNKHQNVLENHQNIPTGTSNKQQNVLLSGEISNSVFPASPVNKEVENFPTVSREQFQSPGSRNAMTPEISNKHQNVQEKHQNIPTVVGISNKPQNVSGISNQHQNVQEKHQNVPTVSGISNTNQKVLLSGGINNNVFPASPAYKEFGNFPTASREQFQSPGSKNHTTENENNYNNNIVFTSHSSSEDDVHSVSSTESDKLTTAHVGKLIEDLQSQSKETQATAAEELRLLTKHNMENRIIVGKCGAIMHLLPLLYSDMKITQEHAVTAILNLSINEDNKTLIMEAGVIEPLIHVLKNGNNGAKENSAATLFSLSVPENNKMKIGRSGAVKALVELLASGTIRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERGIPLLVELVESGSQRGKENAASIVLQLSLHSPKFCTLILQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQREGANGRGKS 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1149g00017 1133 Pfam U-box domain 247 318 IPR003613 GO:0004842|GO:0016567
Vivi1149g00017 1133 Gene3D - 827 1128 IPR011989 -
Vivi1149g00017 1133 SMART arm_5 877 917 IPR000225 GO:0005515
Vivi1149g00017 1133 SMART arm_5 918 958 IPR000225 GO:0005515
Vivi1149g00017 1133 SMART arm_5 959 999 IPR000225 GO:0005515
Vivi1149g00017 1133 SMART arm_5 1000 1039 IPR000225 GO:0005515
Vivi1149g00017 1133 SMART arm_5 1040 1080 IPR000225 GO:0005515
Vivi1149g00017 1133 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Vivi1149g00017 1133 CDD RING-Ubox_PUB 248 300 IPR045210 -
Vivi1149g00017 1133 SUPERFAMILY ARM repeat 848 1120 IPR016024 -
Vivi1149g00017 1133 MobiDBLite consensus disorder prediction 352 373 - -
Vivi1149g00017 1133 FunFam RING-type E3 ubiquitin transferase 832 1126 - -
Vivi1149g00017 1133 Coils Coil 613 633 - -
Vivi1149g00017 1133 PANTHER U BOX DOMAIN-CONTAINING 36 1121 - -
Vivi1149g00017 1133 Coils Coil 195 222 - -
Vivi1149g00017 1133 MobiDBLite consensus disorder prediction 795 821 - -
Vivi1149g00017 1133 Pfam Armadillo/beta-catenin-like repeat 918 957 IPR000225 GO:0005515
Vivi1149g00017 1133 Pfam Armadillo/beta-catenin-like repeat 961 998 IPR000225 GO:0005515
Vivi1149g00017 1133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 970 1012 IPR000225 GO:0005515
Vivi1149g00017 1133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 321 IPR013083 -
Vivi1149g00017 1133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 888 930 IPR000225 GO:0005515
Vivi1149g00017 1133 SUPERFAMILY RING/U-box 245 323 - -
Vivi1149g00017 1133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1011 1052 IPR000225 GO:0005515
Vivi1149g00017 1133 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Vivi1149g00017 1133 MobiDBLite consensus disorder prediction 387 416 - -
Vivi1149g00017 1133 MobiDBLite consensus disorder prediction 352 416 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1149g00017 207 335 U-box Gene Family AT2G23140 46.512 1.79e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1149g00017 - - psat:127126040 1816.59