LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1146g00005	ATGGGTCGCCATTCTTGTTCTTCAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCCATCACATAACCATCTTTGGTGTTGGTTGTTGGAGTTCAGTTCCAAAACTAGCAGGGTTGCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAACTACTTGAGACCTGATTTGAAGAGAGGAATGTTTTCACAACAAGAAGAGAATCTTATTATCACTCTTCATGAAGTACTTGGAAATAGGTGGGCTCAAATTGCAGCTCAACTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCATGTTTGAAGAAGAGGCTAATGAAGCAAGGGATTGATCCAGCTACACATAAGCCATTCTTCAATATTAATACTGAATCAGTTTCAAAGGAAGAGAATGAAAAATCATCAATGATAATGCCGACACCATCTCAATCTCAACCTCAAAGAACTCTATCTTCACAGGAATATTATTATTCAGAAGCACTTCTAATGAATGATTTGATGAATTATCACTATAATATTGGTGGTTTAGCTTTTCCAGAAGCTTCAAGAAAAATTCTCATGAATTCGAATAAGTCATTATTTGATCCATTATGCTATAATCTAAGTGTGAGCAATTATTATCAGCCGAAACCGAATCTGTTTGGAAGTGATTCAAACTATTTCTTCTCTTCAATGCCTTGTTTGAATAGCTCAGACAACAATGACTCAGTTTCCAAATATAGTTCTCTTTTGGTGAATGAAAACTCAAGCAATGGTTGTTCAACTATGAATGATTATGTTGGGTGTGAAATGAGCAACATGATTGAAAATGCAAGTGGATTATTGTCATGGGAAGGTGAGAACAAGGTTTTGGATCCTTTGTTACAGTTTGAAGTCAATGCAGTAAAATGTGAAGAGTTGTTGATCAACAAGACAAGTTCATGGGAAGAAGGACAGTTTCTGACGACTGATAATGATTCAATGAATTTCAGTACTACCTATCCTTTGACGTCAGTGTCAGAAGATCTAAGTAATGAAGCTAATTTTGATGTATTTCAGCATTTATGA	1080	0.3537	MGRHSCSSKQKLRKGLWSPEEDEKLFHHITIFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEENLIITLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKRLMKQGIDPATHKPFFNINTESVSKEENEKSSMIMPTPSQSQPQRTLSSQEYYYSEALLMNDLMNYHYNIGGLAFPEASRKILMNSNKSLFDPLCYNLSVSNYYQPKPNLFGSDSNYFFSSMPCLNSSDNNDSVSKYSSLLVNENSSNGCSTMNDYVGCEMSNMIENASGLLSWEGENKVLDPLLQFEVNAVKCEELLINKTSSWEEGQFLTTDNDSMNFSTTYPLTSVSEDLSNEANFDVFQHL	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1146g00005	359	MobiDBLite	consensus disorder prediction	143	160	-	-
	Vivi1146g00005	359	CDD	SANT	70	109	IPR001005	-
	Vivi1146g00005	359	MobiDBLite	consensus disorder prediction	141	160	-	-
	Vivi1146g00005	359	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Vivi1146g00005	359	SMART	sant	13	63	IPR001005	-
	Vivi1146g00005	359	SMART	sant	66	114	IPR001005	-
	Vivi1146g00005	359	CDD	SANT	17	61	IPR001005	-
	Vivi1146g00005	359	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Vivi1146g00005	359	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Vivi1146g00005	359	FunFam	Transcription factor MYB86	69	138	-	-
	Vivi1146g00005	359	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Vivi1146g00005	359	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Vivi1146g00005	359	PANTHER	MYB DOMAIN PROTEIN 55	1	266	-	-
	Vivi1146g00005	359	Gene3D	-	69	147	-	-
	Vivi1146g00005	359	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Vivi1146g00005	359	Gene3D	-	11	67	-	-
	Vivi1146g00005	359	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Vivi1146g00005	359	FunFam	MYB transcription factor	11	67	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1146g00005	1	139	MYB Transcription Factor Family	AT4G01680	79.137	1.70e-77	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi1146g00005		Myb_DNA-binding	2.8e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1146g00005	K09422		-	gmx:100811140	379.407