Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1146g00001 ATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGTTGCATCTTTGCACCTTACTTTCCACCAGAAGAGCCACAAAAATTCGCAAACGTTCACAAGATCTTCGGCGCAAGCAACGTGACTAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCTCTTGCTTACGAAGCCGAAGCTCGCGTGAGGGATCCAGTTTATGGCTGTGTTGGTGCTATCTCTTTCCTCCAGAGACAAATTCAAAGGCTTCAAAAGGAACTTGATTCCGCTAACGCTGATCTTCTCCGCTTCGCTTACAATGATCTCTCGCCTAACTCGTCTCTTCCGCCTCTTCCTCCTCTTGTTGTTCAATCTTCATTTCATCATCAACCTCAGAGACAGTTCAGTTCGAGATTCGGTATCGGAAATAACAGCGTTGAAGCAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATAACATTAACACCTCTACTACTGAGGATATAAATGGAGGTTTAGGAGCAAGAGGAGGAGTAGGAGGAGGTAACAATTTGTGA 594 0.4478 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQIQRLQKELDSANADLLRFAYNDLSPNSSLPPLPPLVVQSSFHHQPQRQFSSRFGIGNNSVEASGFYSFPYAIPWNDNINTSTTEDINGGLGARGGVGGGNNL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1146g00001 197 Coils Coil 89 109 - -
Vivi1146g00001 197 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vivi1146g00001 197 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vivi1146g00001 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 135 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1146g00001 1 130 AS2 family AT5G63090 75.676 9.90e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1146g00001 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1146g00001 - - gmx:100775922 272.322