Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1141g00005 ATGATTAATTTGCCGCGTTTTAAGATTAGTGGTAGTTTGAGTCCTTCTGTTGCGAATTTAGGTTCTTTGGTTGATATTAGATTGGAGGGTAATCATATAAATGGTGTTGTGCCTAGTAATTGGACTAGTTTGATGAATCTGAAGTTGTTGGATCTGAGTGATAATGATATTTCTCCTCCTTTGCCGGTTTTTAGAAATGGGTTGAAACCTATGGTTGATGGGAATTCTTTGTTGAATGGTGGTGGAGCGAAAGGTCCTTCCTCTGGGAAAAACAGTACGTCGGGTGGATCGGGGAGTACGAGTGATGATACGAAGGGAGGGTCGGATTCAAGTTCGAGTGATTCGGTTGAAACGAAGAAATCCAAAAGGAAAAACGTGGTTTTGATTGTAGCTCCCATTGCTGGTGTTGCGGCTGCTGCTTTTCTGTTGATTCCGCTTTACGCATATTGTTTTAGAAGGACAAAGGATGGATTTCAGGCTCCGAGTTCACTTGTGGTTCACCCGAGAGATCCGTCTGATTCGGACAGTGCTGTAAAGATAGTTGTTGTTAATAATACCAACGGAAGTGTTTCCACTTTGACAGGGAGCAGGACAGGGAGTAGAAACAGCAGCGCGTTTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCGGTTCAAGTTCTAAGAAACGTGACGAAGAATTTCGCCCCTGAGAATGAGCTCGGTCGCGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGACGACGGGACTAAGATTGCAGTAAAAAGAATGGAAGCAGGTGTGATAACCAATAAAGCCTTGGATGAATTTCAAGCTGAAATCGCAGTTCTGTCGAAAGTTCGACATCGACATCTAGTGGCCCTTATAGGTTATTCCATGGAAGGTAACGAGAGGATTCTAGTGTATGAGTATATGCCACAAGGCGCTCTCAGTCAGCATCTTTTCCATTGGAAAAGCCTCGGACTCGAGCCTCTCTCGTGGAAGAGGAGACTCAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTGGCTCAACAGAGCTTCATTCACAGGGATCTTAAGTCCTCAAATATTTTACTCGCTGATGATTTTAGAGCTAAAGTCTTGGATTTCGGATTGGTAAAACTCGCACCTAATGGCGAAAAATCTGTAGTGACTAAACTTGCTGGGACTTTTGGATACTTGGCTCCTGAATATGCAGTGACAGGAAAAATCACAACCAAAGTAGATGTTTTCAGTTTCGGCGTCGTGTTAATGGAGCTGTTGTCTGGATTGATGGCACTCGACGAGGATAGACCCGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGAATATAAAATCCGATAAGAATAAACTAATGGCTGCAATTGACCCAACTCTCGAAATAACCGACGAAACATTCGAGAGCGTCTCAATTATCGCAGAGCTAGCCGGCCACTGCACAGCTAAAGAACCAAACCAAAGGCCAGAAATGGGTCATGCTGTCAACATCCTCGCACCACTCGTTGAAAAATGGAAACCGTTTGACGACGACCCCGACGAGTATTCCGACATCGACTATAGTCTTCCACTTAACCAAATGGTGAAGGGTTGGCAGGAGGCGGAAGGAAAAGACACAAGTTATATGGACTTAGAAGACAGTAAGAGTAGTATCCCCGCGAGACCTACTGGATTTGCGGATTCTTTTACTTCGGCGGATGGCCGGTGA 1734 0.4458 MINLPRFKISGSLSPSVANLGSLVDIRLEGNHINGVVPSNWTSLMNLKLLDLSDNDISPPLPVFRNGLKPMVDGNSLLNGGGAKGPSSGKNSTSGGSGSTSDDTKGGSDSSSSDSVETKKSKRKNVVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSAVKIVVVNNTNGSVSTLTGSRTGSRNSSAFGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSMEGNERILVYEYMPQGALSQHLFHWKSLGLEPLSWKRRLNIALDVARGMEYLHTLAQQSFIHRDLKSSNILLADDFRAKVLDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVTGKITTKVDVFSFGVVLMELLSGLMALDEDRPEESQYLAAWFWNIKSDKNKLMAAIDPTLEITDETFESVSIIAELAGHCTAKEPNQRPEMGHAVNILAPLVEKWKPFDDDPDEYSDIDYSLPLNQMVKGWQEAEGKDTSYMDLEDSKSSIPARPTGFADSFTSADGR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1141g00005 577 FunFam receptor protein kinase TMK1 193 308 - -
Vivi1141g00005 577 PANTHER OSJNBA0070M12.3 PROTEIN 1 577 - -
Vivi1141g00005 577 SUPERFAMILY L domain-like 2 65 - -
Vivi1141g00005 577 MobiDBLite consensus disorder prediction 546 577 - -
Vivi1141g00005 577 Gene3D Ribonuclease Inhibitor 1 79 IPR032675 -
Vivi1141g00005 577 ProSitePatterns Protein kinases ATP-binding region signature. 237 259 IPR017441 GO:0005524
Vivi1141g00005 577 Pfam Protein kinase domain 234 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1141g00005 577 SMART serkin_6 231 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1141g00005 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Vivi1141g00005 577 MobiDBLite consensus disorder prediction 81 114 - -
Vivi1141g00005 577 Gene3D Phosphorylase Kinase; domain 1 192 308 - -
Vivi1141g00005 577 FunFam receptor protein kinase TMK1 309 526 - -
Vivi1141g00005 577 MobiDBLite consensus disorder prediction 75 118 - -
Vivi1141g00005 577 CDD STKc_IRAK 237 510 - -
Vivi1141g00005 577 FunFam Leucine-rich repeat receptor-like kinase 1 80 - -
Vivi1141g00005 577 ProSiteProfiles Protein kinase domain profile. 231 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1141g00005 577 Gene3D Transferase(Phosphotransferase) domain 1 309 526 - -
Vivi1141g00005 577 SUPERFAMILY Protein kinase-like (PK-like) 209 507 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1141g00005 211 515 Receptor kinase-like Gene Family AT3G58690 42.071 2.03e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi1141g00005 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1141g00005 K00924 - vvo:131602560 1037.33