Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1140g00005 ATGGATAAATGGGTCAAAATAATCACGCGCTGCTGTATTATAAGAAACCAACACTCTTCTAACGGTCCAACCTACACACAAACGCCACAACAGACAGAATCCGAATCACTTCCGCTTTCTCTCTCCACCGCCACCAAACTGTCGGCAGAGCTCCGAACAGCCGTGGTGCGTACAATGCAGCTCAAACTTAGCTCAAATCTGAGGCTATTCTGCTTCGGCTTGGCCTTGAAACTCGCCCTTCTGCCAACTGCAGCGGGACAACTTCAGCACCATACCCTCGACATGCATTGGTATCCTGGAACCGCCACCTGGTACGGTGACCCCAACGGAGACGGAAGCACCGGTGGAGCGTGTGGATATGGTACATTGGTGGACGTGAAGCCATTGAGGGCGAGAGTAGGGGCGGTTGGTTCAGTACTGTTTATGAAAGGGGAAGGTTGTGGTGCGTGTTACAAAGTGAAGTGCTTAGATAATAGCATATGTTCAAGGCGAGCAGTTACGGTCATAATCACCGACGAGTGCCCTGGCTGCCCCACTGACTCCACCCACTTTGATCTCAGCGGCGCTGCTTTTGGACACATGGCTATCTCCGGCGAGAATGGTCAGCTCAGAAACCGCGGTCAAATTCCTGTCATTTACCGAAGAACTCCGTGTAAATATCCAGGGAGAAAAATTGCCTTCCATGTTAACGAAGGTTCCACGCCATTTTGGTTATCACTTCTGGTCGAATTTGAAGACGCAGAAGGAGATATAGGCACCATGCATATAAGAGAAAATGGTTCTAGTGAGTGGCTGCAAATGAATCATGTGTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGACCATACTCTGTTAAACTCAGCTCTTCCACTGGTAGAACCCTATCTGCTAGGGATGTTATTCCTAGCAATTGGGTTCCAAAGGCCACTTACACTTCTCGCCTAAATTTCTACCCTTAA 969 0.4912 MDKWVKIITRCCIIRNQHSSNGPTYTQTPQQTESESLPLSLSTATKLSAELRTAVVRTMQLKLSSNLRLFCFGLALKLALLPTAAGQLQHHTLDMHWYPGTATWYGDPNGDGSTGGACGYGTLVDVKPLRARVGAVGSVLFMKGEGCGACYKVKCLDNSICSRRAVTVIITDECPGCPTDSTHFDLSGAAFGHMAISGENGQLRNRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGTMHIRENGSSEWLQMNHVWGANWCIIGGPLRGPYSVKLSSSTGRTLSARDVIPSNWVPKATYTSRLNFYP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1140g00005 322 SMART dpbb_1 133 213 IPR007112 -
Vivi1140g00005 322 FunFam Expansin B3 83 219 - -
Vivi1140g00005 322 CDD DPBB_EXPB_N 97 218 - -
Vivi1140g00005 322 FunFam Beta-expansin 3 220 321 - -
Vivi1140g00005 322 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Vivi1140g00005 322 PRINTS Major pollen allergen Lol pI signature 227 242 IPR005795 GO:0005576|GO:0019953
Vivi1140g00005 322 PRINTS Major pollen allergen Lol pI signature 243 258 IPR005795 GO:0005576|GO:0019953
Vivi1140g00005 322 PRINTS Major pollen allergen Lol pI signature 292 309 IPR005795 GO:0005576|GO:0019953
Vivi1140g00005 322 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Vivi1140g00005 322 PRINTS Expansin/Lol pI family signature 137 155 IPR007118 GO:0005576
Vivi1140g00005 322 PRINTS Expansin/Lol pI family signature 114 132 IPR007118 GO:0005576
Vivi1140g00005 322 PRINTS Expansin/Lol pI family signature 302 316 IPR007118 GO:0005576
Vivi1140g00005 322 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Vivi1140g00005 322 PRINTS Expansin/Lol pI family signature 96 111 IPR007118 GO:0005576
Vivi1140g00005 322 PRINTS Expansin/Lol pI family signature 206 222 IPR007118 GO:0005576
Vivi1140g00005 322 Pfam Lytic transglycolase 138 212 IPR009009 -
Vivi1140g00005 322 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 236 316 IPR007117 -
Vivi1140g00005 322 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 115 223 IPR007112 -
Vivi1140g00005 322 PANTHER EXPANSIN-B3 78 320 - -
Vivi1140g00005 322 Gene3D - 219 317 IPR036749 -
Vivi1140g00005 322 Pfam Expansin C-terminal domain 225 305 IPR007117 -
Vivi1140g00005 322 SUPERFAMILY PHL pollen allergen 223 316 IPR036749 -
Vivi1140g00005 322 Gene3D - 83 218 IPR036908 -
Vivi1140g00005 322 SUPERFAMILY Barwin-like endoglucanases 92 222 IPR036908 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1140g00005 74 258 Expansin Gene Family AT4G28250 71.351 3.28e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1140g00005 K20628 - gmx:100804525 476.863