Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi113g00025 ATGGCTGGTTTGATTGGGAAGGAGAATGGTTTGAACATGAAGGAGACTGAGCTTTGTCTTGGTTTGCCTGGTGGCGGTGAGGTTGAAACTCCTAGAGCTGCTGGAAAGAGAGGTTTCTCTGAGACAGTTGATCTGAAGCTGAATCTTCAAACCAAGGAAGATTTGAGTGAGAATCTGAAGAATGTTTCCAAGGAGAAGAACATGCTTAAGGACCCTGCCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCACAGAAGGTTAACAATACTGAGGAGAATGAGAAGACAACAAGTAGCACTACTGCTGGTGCATTTGTGAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTCGACTTGACAATGTACAAAACCTACAAAGACTTATCTGATGCATTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAAAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGGATCATGCAAACGTCTCCGCATTATGAAAGGGTCAGAAGCTATTGGGCTTGCACCAAGAGCAATGGAGAAATGCAAAAACAGAAGCTAA 702 0.4501 MAGLIGKENGLNMKETELCLGLPGGGEVETPRAAGKRGFSETVDLKLNLQTKEDLSENLKNVSKEKNMLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNTEENEKTTSSTTAGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi113g00025 233 ProSiteProfiles PB1 domain profile. 115 215 IPR000270 GO:0005515
Vivi113g00025 233 Pfam AUX/IAA family 33 224 IPR033389 -
Vivi113g00025 233 Gene3D - 109 227 - -
Vivi113g00025 233 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 220 IPR003311 GO:0005634|GO:0006355
Vivi113g00025 233 SUPERFAMILY CAD & PB1 domains 111 214 - -
Vivi113g00025 233 FunFam Auxin-responsive protein 110 225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi113g00025 107 223 B3 DNA Binding Superfamily AT4G23980 29.915 1.40e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi113g00025 AUX_IAA 4.1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi113g00025 K14484 - gmx:547949 408.683