Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1139g00010 ATGATCTCTACATCAAGAGGAGGAACTAGTAGTGCAATGAGGAAACCAGAAGCTGCATCTGGTAAAAACAACAACTCAAACAATAAGCTTAGAAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAACTTATGAACTATATGTTGAACAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGGTTGCAGAGATGTGGAAAGAGTTGTAGGCTTAGATGGATTAATTACTTGAGACCTGATCTTAAACGTGGTGCATTTTCACCACAAGAAGAAGAACTTATCATCCATTTGCATTCTCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCAGGAAGAACAGACAACGAAATCAAGAACTTCTGGAACTCGACGATAAAGAAAAGACTCAAGAACATGTCGTCCAACACTTCTCCAAACCCAAGCGACGAATCCTCGTACGACGCTAACAAAGATCATCATAACATGGGAGGTTTCATAACATCTTCAACACAAGACCAACAACATATTGATCACAACCATTTTATGCCTATGTTCAATACTTCCTCACCACCTTCCATGCAAAACACAGTTTTCAATACCATCATCTCAGCTTCTTCCGGCGGCGGATTCTTCAATAACAATAACAATAATAATAATAATAATACCAATACCGGTTCATACTTCTCGCAGAATAATCATGACAGCAAAAGTACTTTTTATTTGGAAAAAGTGTTTGGGAGTGTAAATATCAATGGTGCAGAAAGAGAAGATGAGATTGGAATCTACAATGTTCCTCCTCTAGAGAGTGTTAACAGCACTATCACTTATGATGAACATACTATAAAAATGGAGAAGAACATTGCATTCAATGGAGAAGATACTTATAACAATAGTAGCTATAACTTTGATAACATTAACAACATTGTTAATGTTAGTAAGAGAAGTGATAATCAAAATAGAGGTGAAGATGAGGTGGAGAATTTGTTTCATGGAGATTTATCTGTGGGAGATTGGGACTTGGAGGATTTGATGAAAGATGTTTCATCTTTTCCATTTCTTGATTTTTCAAACTGA 1068 0.3736 MISTSRGGTSSAMRKPEAASGKNNNSNNKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNPSDESSYDANKDHHNMGGFITSSTQDQQHIDHNHFMPMFNTSSPPSMQNTVFNTIISASSGGGFFNNNNNNNNNNTNTGSYFSQNNHDSKSTFYLEKVFGSVNINGAEREDEIGIYNVPPLESVNSTITYDEHTIKMEKNIAFNGEDTYNNSSYNFDNINNIVNVSKRSDNQNRGEDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1139g00010 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Vivi1139g00010 355 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Vivi1139g00010 355 Pfam Myb-like DNA-binding domain 85 128 IPR001005 -
Vivi1139g00010 355 FunFam MYB transcription factor 29 85 - -
Vivi1139g00010 355 PANTHER MYB DOMAIN PROTEIN 55 25 302 - -
Vivi1139g00010 355 MobiDBLite consensus disorder prediction 135 159 - -
Vivi1139g00010 355 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1139g00010 355 MobiDBLite consensus disorder prediction 1 34 - -
Vivi1139g00010 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 79 IPR017930 -
Vivi1139g00010 355 CDD SANT 87 127 IPR001005 -
Vivi1139g00010 355 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Vivi1139g00010 355 FunFam Transcription factor MYB46 86 156 - -
Vivi1139g00010 355 Gene3D - 86 160 - -
Vivi1139g00010 355 MobiDBLite consensus disorder prediction 135 149 - -
Vivi1139g00010 355 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Vivi1139g00010 355 Gene3D - 29 85 - -
Vivi1139g00010 355 CDD SANT 35 79 IPR001005 -
Vivi1139g00010 355 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Vivi1139g00010 355 SMART sant 84 132 IPR001005 -
Vivi1139g00010 355 SMART sant 31 81 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1139g00010 15 353 MYB Transcription Factor Family AT3G08500 46.857 9.16e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1139g00010 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1139g00010 K09422 - gmx:100786151 387.882