Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1135g00004 ATGACAAGAACGCTTGCCCCCTCTGATACTGAGGTTTCTGGACTTGAAAACAAACATCTGGGGCGGATCACACAAATAATCAGTCTGGTACTGGGTGTAATTTTTTCACCAGGGAAGATGCATTATATTTACAAAGCTTTGATAGTTCAAGGTCGAGATAGGGCTGGCCAACAAATTAACGTAACTTGTGAAGTACAACAATTATTAATAAATAATCGAATTAGAGTTGTAGCTATGAGTGCTACATATGGTCTAAAGAGAGGAATGGAAGTGATTGACACGGGAGCTGCTCTGAGTGTTCCAGTCGGTGGAGCAACCCTTGGTCGAATTTTCAACATCCTTGGAGAGCCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCTGCCTTTATACAGTTAGATACACAATTATCCATTTTTGAAACAGGAATTAAAGTAGTTGATCTTTTAGCTCCTTATCGCCGTGGCGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTAGGCAAAACAGTCCTCATTATGGAATTGATCAATAACATTGGAAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGCGGGGGAAATGATCTTTATATGGAAATGATAGAATCCAGAGTAATTAATGAAAAAAATATTGCGGAATCAAAAGTAGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAAAGTTGGTTTAACTGCCCCAACTATGGCAGAATATTTCCGAGATGTCAATGAGCAGGATGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCTGAAGTATTCGCCTTATTGGGCCGAATGCCTTCCGCTGTGGGTTATCAACCCACTCTGAGTACTGAAATGGGTACTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGAAGTTTATGTACCTGCAAACGATTTGACCGATCCTACTCCTGCCATGACATTTGCACATTTGGATGCAACTACTGTACTATCAAGAGGATTAGGTGCCAAAGGTATTTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACCATGCTCCAACTTCGGATCGTCGGTCAAGAACATTATGAAACTGCGCAAAGAGTTAAGCAAACGTTAGAACGTTACAAAGAACTTCAGGACATCATCGCTATTCTTGGGTTGGATGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATTACAACCTTTTTTCGTAGCAGAAGTATTTACCGGTTCCCCAGGGAAATATGTTGCTCTAGTAGAAACAATTAGAGGATTTCAATTGATTCTTTCTAGAGAATTAGATAGTCTTCCTGAACAAGCCTTTTATTTGGTGGGTATTATCGATGAAGCTACTGTGAAGGCTAAGAACATAACTTAG 1476 0.4065 MTRTLAPSDTEVSGLENKHLGRITQIISLVLGVIFSPGKMHYIYKALIVQGRDRAGQQINVTCEVQQLLINNRIRVVAMSATYGLKRGMEVIDTGAALSVPVGGATLGRIFNILGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIGKAHGGVSVFGGVGERTRGGNDLYMEMIESRVINEKNIAESKVALVYGQMNEPPGARMKVGLTAPTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVFALLGRMPSAVGYQPTLSTEMGTLQERITSTKEGSITSIQEVYVPANDLTDPTPAMTFAHLDATTVLSRGLGAKGIYPAVDPLDSTSTMLQLRIVGQEHYETAQRVKQTLERYKELQDIIAILGLDELSEEDRLTVARARKIERFLLQPFFVAEVFTGSPGKYVALVETIRGFQLILSRELDSLPEQAFYLVGIIDEATVKAKNIT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1135g00004 491 Gene3D - 13 97 - -
Vivi1135g00004 491 FunFam ATP synthase subunit beta 375 491 - -
Vivi1135g00004 491 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 376 489 - -
Vivi1135g00004 491 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vivi1135g00004 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Vivi1135g00004 491 Gene3D - 98 374 IPR027417 -
Vivi1135g00004 491 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Vivi1135g00004 491 NCBIfam F0F1 ATP synthase subunit beta 20 489 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vivi1135g00004 491 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Vivi1135g00004 491 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Vivi1135g00004 491 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 20 96 IPR036121 GO:0046034|GO:1902600
Vivi1135g00004 491 FunFam ATP synthase subunit beta 98 374 - -
Vivi1135g00004 491 SMART AAA_5 164 420 IPR003593 GO:0016887
Vivi1135g00004 491 CDD ATP-synt_F1_beta_N 21 98 - -
Vivi1135g00004 491 Gene3D - 375 491 IPR024034 -
Vivi1135g00004 491 CDD F1-ATPase_beta_CD 99 376 - -
Vivi1135g00004 491 PANTHER ATP SYNTHASE 16 490 - -
Vivi1135g00004 491 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Vivi1135g00004 491 CDD ATP-synt_F1_beta_C 379 486 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1135g00004 94 433 Primary Pumps ATPases(2) AT1G20260 26.954 5.95e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1135g00004 K02112 - gmx:3989272 826.624