Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1134g00005 ATGCGCACAGCCACCACGATAGCGAATAACAGAACTCTTCTTCTCCAATGTTCACCCTTACCCTTACCTCAATTGTTCCTACGCGTGCGCCATCATTCATCTACCAAATTGTTCGTCGCAGGGCTTTCGTATAACACAAATGAAACGGTCCTAAGAGACACATTTGAACAACATGGGGAAATCATTGAAGTTAAAGTAATATGTGACCATAAAACTGGGGAATCAAAGGAGTACGGGTTTGTTAGGTTCAATTCTGAAACTGCAGCTGCCACAGCTCGCAAAGAATTGCACGGAAAGATAGTGGACGGCAGAAGAATTCGAGTGGGTTATGCGCACAAAGGGTGA 345 0.4464 MRTATTIANNRTLLLQCSPLPLPQLFLRVRHHSSTKLFVAGLSYNTNETVLRDTFEQHGEIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKIVDGRRIRVGYAHKG 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1134g00005 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Vivi1134g00005 114 SMART rrm1_1 36 109 IPR000504 GO:0003723
Vivi1134g00005 114 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 113 - -
Vivi1134g00005 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Vivi1134g00005 114 Gene3D - 21 114 IPR012677 -
Vivi1134g00005 114 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 23 114 - -
Vivi1134g00005 114 SUPERFAMILY RNA-binding domain, RBD 14 113 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1134g00005 35 113 Eukaryotic Initiation Factors Gene Family AT3G16380 40.506 2.96e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1134g00005 K13195 - gmx:100306540 145.591