Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1129g00006 ATGGATCTTGAGACAAAGCTTACAGAAAATTTCTACTTCAAATCCAACATGAAAAATCAAGAGAATCCTTTCATTGTTCCTCCATCTCAAGGATTCTTACAAGATTTTAATCACATTGATAAATTTAATCCGAATGGTACTTTTTTCAATCATGTTTCTGGGGTCCAAAACTTCGGTCCTAGTGATAAATTTTCTTTTGCTGATAATGATTTCAAGCCATTTGTCGAGAATAGTGGTAATAGTAATGGTAATGGTAATGGTCATGCTTTTGTAATGGACAATTTTCTTCATGGAGGTTATGACTTGAACAATCTTTCTCAGAGGAATAATCAAGTCGAAACGATGGTTACAAACCAAAGTAATTATTTTCCCTTTAATATTAATATTCCTCAAGAAACCAAACCTTTGAGTTTTGTTGCACCAGATGAAGTTTCATGCATGCCTTCAATGAGATATTACAAAAGATTTGGCATGAATAGAAACAGCAAAGCATATCCTCTCACAAGAAAGATAGAAAAAATTCGTAAGAATTCCAACGTTGTGAAAGGACAATGGACTGTAGAAGAAGATGGGTTGTTGATTCAGCTGGTTGAACAAAATGGTTTGAGAAAATGGTCTCGTATTGCTCAGATGTTGCCTGGTAGAATTGGAAAACAATGCCGAGAGCGATGGCATAATCATCTAAGGCCTGATATTAAGAAGGACATATGGAGTGAAGAAGAGGACAGAATATTGATCAAAGCTCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCTAAAAAGTTACCAGGAAGAACTGAAAACTCAATAAAAAACCATTGGAATGCAACCAAGAGAAGACAATATTCTAAAAGAAAGTGTCGTTCGAAATACCCTAGAGGAAATCTTCTACAAGATTATATCAAGAGCTTGAACTTAGACAAAAACCCCCCAAAAGATTATAGAAAAAAATCATCAACTAATGTCAGTGTCATGAAAAACAATACCAACAAAGACACAACAATAGCAATATCAGCTCAGTCTCAGCCTCAGTCTCAGTCTCAGAAAGCTGAACAGTTTTGTCCAAGTGATGAGTGTTTGGTTCCGAGTTGTGGTTTTGATGATGTTCCAGATTTTTGTTTTGATGAGAGTTTGTTTCAAGATGGGTGTAGTATTGATTCTCTTCTGGATGATGTGAAAATTATGGAAGGAAAAAAACATTGTGATGTTGAGAAAGAGATTATGGAATCTATGTTTGGAGCTGAAGTTAAGAAGGAGATGGATTTGATTGATATGGTTTTTTCATGTCAATGA 1296 0.3511 MDLETKLTENFYFKSNMKNQENPFIVPPSQGFLQDFNHIDKFNPNGTFFNHVSGVQNFGPSDKFSFADNDFKPFVENSGNSNGNGNGHAFVMDNFLHGGYDLNNLSQRNNQVETMVTNQSNYFPFNINIPQETKPLSFVAPDEVSCMPSMRYYKRFGMNRNSKAYPLTRKIEKIRKNSNVVKGQWTVEEDGLLIQLVEQNGLRKWSRIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDRILIKAHGEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGNLLQDYIKSLNLDKNPPKDYRKKSSTNVSVMKNNTNKDTTIAISAQSQPQSQSQKAEQFCPSDECLVPSCGFDDVPDFCFDESLFQDGCSIDSLLDDVKIMEGKKHCDVEKEIMESMFGAEVKKEMDLIDMVFSCQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1129g00006 431 ProSiteProfiles Myb-like domain profile. 177 228 IPR001005 -
Vivi1129g00006 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 283 IPR017930 -
Vivi1129g00006 431 PANTHER MYB PROTEIN-RELATED 158 339 - -
Vivi1129g00006 431 Gene3D - 181 234 - -
Vivi1129g00006 431 FunFam Transcriptional activator Myb isoform A 181 234 - -
Vivi1129g00006 431 CDD SANT 237 279 IPR001005 -
Vivi1129g00006 431 ProSiteProfiles Myb-like domain profile. 229 279 IPR001005 -
Vivi1129g00006 431 Gene3D - 236 296 - -
Vivi1129g00006 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 232 IPR017930 -
Vivi1129g00006 431 SMART sant 181 230 IPR001005 -
Vivi1129g00006 431 SMART sant 233 281 IPR001005 -
Vivi1129g00006 431 FunFam Transcription factor MYB119 235 299 - -
Vivi1129g00006 431 SUPERFAMILY Homeodomain-like 179 275 IPR009057 -
Vivi1129g00006 431 CDD SANT 185 228 IPR001005 -
Vivi1129g00006 431 Pfam Myb-like DNA-binding domain 182 228 IPR001005 -
Vivi1129g00006 431 Pfam Myb-like DNA-binding domain 237 276 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1129g00006 80 393 MYB Transcription Factor Family AT4G18770 51.070 1.34e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1129g00006 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1129g00006 K09422 - gmx:102662267 478.404