Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1125g00003 ATGTCTGCAACTACGAGAACAACTTCATGGGCAGATTCTGCTGAAAATGCGGCCAATGGCTCGTCAGCGCGTCCTGTCAAGCCAGCGTATGTTCCTCCACATCTTCGTAACAGATCAATGGCTCCAGCTGAGCCTCCTTCTATGGGGGGTAATGTTAATGAGAGGGGTTTGGGTAATTGGGGTAGTTCGTCTAACTTCAATAAGCAGGATTTTAGGGCTGGTAGGCAAGGATATGGTTCTGGTGGTGGCGGTGGTGGTGGTGGGTTTAACAATAGAGGAGGGGGAGGGGTAGTGAGGGAGCATGGTGGGAGGCGTGAGGCAAATCCTTTTGAGAATGATATTAATGAGTCTTTTAGTGAGCAAGAGAACACGGGGATTAACTTTGATGCTTATGATGATATCCCTGTTGAGACTAGTGGGGAGAATGTTCCGCCTCCTGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAACATACAGAGATGTAAGTATGTGAAACCAACGCCTGTTCAGAGGTATGCCATACCTATTTCTCTTGCTGGAAGAGATTTGATGGCTTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCATTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCAGTATGCTCAAAGACCCCGTGTCGCTCGCACTGCTTATCCTCTCGCACTTATTCTGTCCCCTACCCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAAAAGTTTTCTTATGAAACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCGATCACTCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGACTAGTTGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGACGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATCCAGAGACTTGCGTCAGATTTTCTTGCAAGTTACATATTTCTGGCTGTAGGAAGGGTCGGTTCAAGTACCGATCTAATTTCTCAACGAGTAGAATATGTGCTTGAGTCAGACAAAAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGAAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAACTTGCATTCATGGTGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCGTTCAAGACTGGAAATACTCCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCAAGGGTAGCACATGTGGTAAACTTTGATCTTCCTAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGCCGAGCTGGTAAAATGGGATTAGCAACAGCTTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCTTGGCTCACCCGTTTTGCAGCAAAGACTCCTTATGGTGGCAGTAGAAATAAGCGAAGTGGTGGAGCCCGTTTTGGTGGTCGCGATGTTAGGAAGGAAACCTCATATAATAAAGGAACCGATTACTACGGCGGTGGAGCTGGTGCTGGTTACGGGGTTCCTGCGAGCTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1815 0.4612 MSATTRTTSWADSAENAANGSSARPVKPAYVPPHLRNRSMAPAEPPSMGGNVNERGLGNWGSSSNFNKQDFRAGRQGYGSGGGGGGGGFNNRGGGGVVREHGGRREANPFENDINESFSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYETGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLISQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRFAAKTPYGGSRNKRSGGARFGGRDVRKETSYNKGTDYYGGGAGAGYGVPASYGGGYGQGVTSAWD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1125g00003 604 Gene3D - 366 545 IPR027417 -
Vivi1125g00003 604 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 541 - -
Vivi1125g00003 604 MobiDBLite consensus disorder prediction 1 111 - -
Vivi1125g00003 604 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1125g00003 604 FunFam Probable ATP-dependent RNA helicase DDX4 111 365 - -
Vivi1125g00003 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 363 IPR014001 -
Vivi1125g00003 604 MobiDBLite consensus disorder prediction 56 71 - -
Vivi1125g00003 604 CDD SF2_C_DEAD 375 511 - -
Vivi1125g00003 604 CDD DEADc_DDX3_DDX4 149 369 IPR044763 GO:0003724|GO:0005524
Vivi1125g00003 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 519 IPR027417 -
Vivi1125g00003 604 Pfam DEAD/DEAH box helicase 172 352 IPR011545 GO:0003676|GO:0005524
Vivi1125g00003 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 541 IPR001650 -
Vivi1125g00003 604 FunFam ATP-dependent RNA helicase RhlB 366 544 - -
Vivi1125g00003 604 SMART ultradead3 167 378 IPR014001 -
Vivi1125g00003 604 Gene3D - 105 365 IPR027417 -
Vivi1125g00003 604 Pfam Helicase conserved C-terminal domain 387 502 IPR001650 -
Vivi1125g00003 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Vivi1125g00003 604 SMART helicmild6 421 502 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1125g00003 146 534 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 3.82e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1125g00003 K11594 - gmx:100818326 920.228