Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1124g00006 ATGGCTAGAAGAACTAGAACCTATGACAACGTTGTTGCTCATCTTCTGTTCTCTAACATAATGATCTTCTTCATTCCTATTGTCATCTCCCTCAGAAGCCTCACTCCAGACAAATCCATCAACTATAACGAGTTCCTAGTCTCCGAAACCGGAAAATTCAAAGCCGGGTTCACCAACATAGAGACTTCACCAAACATATACTTTTGTATATGGTACAAGAATCTCAACCCAAGGACAATTGTTTGGGTGGCCAATAGAGATACACCACTGCAAAACTCAACAGGAGTATTCAAATTCAAACTCAAACTCACTGATACAGGAAATCCAGTCATAGTTGATGGCTCGGAGAACACAATTTGGTTCTCTAATGCATCAACAGTTGTAGAGAATCCGTCTCTATTGCTCTTGGACTCCGGAAACATCGTTGTACAAAACGGAAGTGTTAATGATGTTTGGTGGCAAAGCTTTGATTATCCTGGTGATACTTTATTACCCGGGATGATTCTTCGAACTGATAGAATCACTGGAGCGCATAATTCTTTGATATCATGGAAAAACACAGGTGATCCTGCAAGAGGTGAGTTTTCGTATCATATAGATTCTAATGGTTTTCCGCAACTCTTTATTTCGAAAGGATCGGTGTTAGTTTATAGACTAGGCTCATGGAATGGATTTTTCTTCACTGGGATCCCTTGGGAAACACTCTATAGTTATTTCAAATTTTCTTTTGAGTTGACTGAGGAACAAGTTCGATTTAAATATGAACCGTTAAACGACACGATTGTTTCGAGATACCTTATCACTCCGACCGGCTTCGTGCAACGTTACATTTGGTTATATACGACCGAAACTTGGCAACTTTTCCTCGCTGGCCCTGGGGACCAGTGTGAGAATTATAACATATGTGGTGCGAATTCTGATTGTAATGTGGGGAACCAAGAGATATGCAAATGTCTCATTGGTTTCGCACCTAAATCGTCGAATGATAGTGACGGGTGTGTTAGGAAGGTGAAATTGGATTGTGACGATAGAGACGGATTTGTTAAGTATACAAAGATGAAGTTGCCGGATACGTCTGAGTCATGGTTTGATGAGAAAATGAATCTTGTGGAATGTGAGAAGCAATGCCGGAAAAATTGTAGTTGCATCGCTTATGCGAGTTTAAATATTAGAAATGGTGAAAGTGGATGCATCATTTGGTTCAATAACATCACTGATATGAGGACAGAAATCTTTGTTGGGCAAGAGATTTACATAAGAGTGGCTGCTTCAGAATTAGGTAGTTCAACGAATAACACAAAGAAGAAATTGATAGCAGGTATTTTACTAGGAATCGGAATCCTCTTTTTGGGTATTACAACGGTCGGATATGTCATTTTTCTAAAGAGGAAAAATCTTCAGAAGTCAGGTAGGGACACGCCAATTAACCATGAAGATAACATGAATCATGAGAAGGAAAACATTGACATATCAACTTTTCATTTTTCTACCATAGCTAATGCCACTGACCAATTCTCCCAAATTAAGAAACTGGGAGAAGGTGGATATGGACCTGTTTACAAGGGTGTACTAGCAAATGGTAGAGAGATTGCTGTCAAGCGGCTTTCGATTAAATCTGTACAAGGACCACAGGAATTTCAAAATGAAGTTATATTGATTGCAAATCTTCAGCATAGAAATCTTGTGAAACTCATTGGTTGTTGTATTCATAATGATGAAAGAATATTGATTTATGAATACATGCCTAACAGAAGTTTGGACAAATTTATTTTCGATCGAACTAAAAGTCAAGTATTGGATTGGAACACACGTTTTCATATTATAAGCGGGATTGCACGAGGACTTCTGTATCTTCATCAAGATTCTAGAGTAAGAATCATCCATAGAGATCTAAAAACCAGTAATATTCTTCTTGATAATGATATGAACCCAAAGATATCAGACTTTGGACTCGCTAGAGCTTTTGGCGGAGATCATGACGAGGCTAATACAGTCAGAGTAGTGGGAACTCATGGTTACATGCCTCCAGAGTATGCTGTATATGGATCTTTTTCAGTAAAGTCGGATGTCTTCAGTTTCGGTGTTATTGTTCTAGAAATTGTTAGTGGGAGGAAGAGCAGAGAATTTTTCAACCCGGAACATAATCTTAACCTTATTGGACAAGCTTGGAGATTGTGGAGTGAGGATAAACAATTGGAACTGATAGATGAGTCCCTTAAAGGTTCAGTTATTATGGATGAGGCATTAAAATGTATTCACATAGGACTCTTATGTGTGCAAGATAGAGCAGATGATAGGCCTGAAATGTCATCTGTTGTTCTAATGATGAATGGGGAGAGAGCATTGCCTAATCCAAGGCAGCCAGGGTTTTATCCACATGAAGTTGTGTCTTACTCAAGCAAACAAGAATTGTCATCAACAAATGAAATTTCTATTTCAATGTTACACCCAAGATAA 2457 0.385 MARRTRTYDNVVAHLLFSNIMIFFIPIVISLRSLTPDKSINYNEFLVSETGKFKAGFTNIETSPNIYFCIWYKNLNPRTIVWVANRDTPLQNSTGVFKFKLKLTDTGNPVIVDGSENTIWFSNASTVVENPSLLLLDSGNIVVQNGSVNDVWWQSFDYPGDTLLPGMILRTDRITGAHNSLISWKNTGDPARGEFSYHIDSNGFPQLFISKGSVLVYRLGSWNGFFFTGIPWETLYSYFKFSFELTEEQVRFKYEPLNDTIVSRYLITPTGFVQRYIWLYTTETWQLFLAGPGDQCENYNICGANSDCNVGNQEICKCLIGFAPKSSNDSDGCVRKVKLDCDDRDGFVKYTKMKLPDTSESWFDEKMNLVECEKQCRKNCSCIAYASLNIRNGESGCIIWFNNITDMRTEIFVGQEIYIRVAASELGSSTNNTKKKLIAGILLGIGILFLGITTVGYVIFLKRKNLQKSGRDTPINHEDNMNHEKENIDISTFHFSTIANATDQFSQIKKLGEGGYGPVYKGVLANGREIAVKRLSIKSVQGPQEFQNEVILIANLQHRNLVKLIGCCIHNDERILIYEYMPNRSLDKFIFDRTKSQVLDWNTRFHIISGIARGLLYLHQDSRVRIIHRDLKTSNILLDNDMNPKISDFGLARAFGGDHDEANTVRVVGTHGYMPPEYAVYGSFSVKSDVFSFGVIVLEIVSGRKSREFFNPEHNLNLIGQAWRLWSEDKQLELIDESLKGSVIMDEALKCIHIGLLCVQDRADDRPEMSSVVLMMNGERALPNPRQPGFYPHEVVSYSSKQELSSTNEISISMLHPR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1124g00006 818 Pfam Protein kinase domain 505 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1124g00006 818 Pfam PAN-like domain 341 407 IPR003609 -
Vivi1124g00006 818 SMART serkin_6 505 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1124g00006 818 ProSiteProfiles Protein kinase domain profile. 505 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1124g00006 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 784 - -
Vivi1124g00006 818 CDD PAN_AP_plant 337 422 - -
Vivi1124g00006 818 Gene3D - 29 156 IPR036426 -
Vivi1124g00006 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 580 - -
Vivi1124g00006 818 SMART ntp_6 342 421 IPR003609 -
Vivi1124g00006 818 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Vivi1124g00006 818 CDD B_lectin 43 159 IPR001480 -
Vivi1124g00006 818 SMART blect_4 37 159 IPR001480 -
Vivi1124g00006 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 22 766 - -
Vivi1124g00006 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Vivi1124g00006 818 ProSiteProfiles Bulb-type lectin domain profile. 31 156 IPR001480 -
Vivi1124g00006 818 CDD STKc_IRAK 511 778 - -
Vivi1124g00006 818 SUPERFAMILY Protein kinase-like (PK-like) 489 802 IPR011009 -
Vivi1124g00006 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 190 IPR036426 -
Vivi1124g00006 818 Pfam D-mannose binding lectin 79 185 IPR001480 -
Vivi1124g00006 818 Gene3D Hepatocyte Growth Factor 338 415 - -
Vivi1124g00006 818 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Vivi1124g00006 818 Gene3D Phosphorylase Kinase; domain 1 477 580 - -
Vivi1124g00006 818 Gene3D Transferase(Phosphotransferase) domain 1 581 784 - -
Vivi1124g00006 818 PIRSF SRK 6 818 IPR024171 GO:0004674
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1124g00006 392 818 Receptor kinase-like Gene Family AT4G23220 44.396 1.72e-120 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1124g00006 Pkinase 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1124g00006 - - gmx:106794307 955.281