Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1124g00002 ATGAATGTTGTTGAATTACTTAGACCCTTTGTTGAGACTAAAGCTTGGGACTATGTTGTTGTTTGGAAATATGGAAATGACCCAACTAGTTTTATTGAATGGATGGGTTGTTGTTGTTGTGGTGGCAACATTGAGAAGGTGAAGATCAAAGAGGAATACAAGATGGCTCCCATTTGTAGGGATACCCTCTTTCCTCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCAAAGCTTCCTTTTGCAATGTCTCTTTATTCTAGTGTTCATGGAGAGGTTGCAATTTCACAACAACCAATATGGCATATCCAGGAGGACTCAATCGGAACTCGAGTTTTGATTCCTATTTTGGGTGGTCTTGTGGAGCTCTTCACTTCAAAGCTGATAGCAAAAGATATAAACATCATAGAGTTCATATCAGCACACTGCTGTGTCTCTATAAAGCAAGAAGCCACATCAGCACAGAGCTACACCAATATGAACTTCAATGAGCATTATTACCCTTTAACTCCCGGTCTATCTGCAGAAAACCATAGCAGCTCTAATCCAAGCATTGAAGGACCCTCCAATGGGTCTAATCCTTCAACAGAACACTTATCATTTGATTCAAAGTTTGATTGCTTGGTTCCACATGAATATCTGAATCAACCGGTTGAAATATCTCCTATACCGAAAGTTAAAAGCCGCGGGTACAATAAAAATAAGAGTTTCCATTATGGAAATGGCGAAGAAGTTAAAGCAGAAACTGTTAAGGAGCCTCAAAAGGAAATGTATCATGCTAAAAATCTTATCACAGAGAGGAATAGGAGGAAAAGAATTAAACAGGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACCAAGATGGATAGAGCAGCAATTGTGGATGATGCAATTGAATACATAAAGGAATTGCAGAGGCAAAAGATAAAACTTCAAGAAGAGGTCGAGGTTTTAGATGTTGAGGATTGTAAAAAGAACACACTACAAATGAAGGTGCAAGGAGACAAAGAACAACCTCTCAGTGAGCTTCATCAAAGTTCTTCTGATTCCATTAGAAAGACACAGATGGAGTTGCAAGTAGAAGTGAATCATGTTCGCAGAACAGAATTCATGATCAAGTTGTGCTGTGAAATGAAGCGGAGTGGGTTTTCAGAGTTGATGGAAGCAATAGATTCATTTGGACTGCATGTGACAACTGCCGAGGATATTCACCCGACAAAACTCAGAGAGTATTTGATACAGAAGACAAGTTGA 1260 0.3921 MNVVELLRPFVETKAWDYVVVWKYGNDPTSFIEWMGCCCCGGNIEKVKIKEEYKMAPICRDTLFPHPVRTKTCEALAKLPFAMSLYSSVHGEVAISQQPIWHIQEDSIGTRVLIPILGGLVELFTSKLIAKDINIIEFISAHCCVSIKQEATSAQSYTNMNFNEHYYPLTPGLSAENHSSSNPSIEGPSNGSNPSTEHLSFDSKFDCLVPHEYLNQPVEISPIPKVKSRGYNKNKSFHYGNGEEVKAETVKEPQKEMYHAKNLITERNRRKRIKQGLFTLRSLVPNITKMDRAAIVDDAIEYIKELQRQKIKLQEEVEVLDVEDCKKNTLQMKVQGDKEQPLSELHQSSSDSIRKTQMELQVEVNHVRRTEFMIKLCCEMKRSGFSELMEAIDSFGLHVTTAEDIHPTKLREYLIQKTS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1124g00002 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 320 IPR036638 GO:0046983
Vivi1124g00002 419 Gene3D - 248 323 IPR036638 GO:0046983
Vivi1124g00002 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Vivi1124g00002 419 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 127 402 - -
Vivi1124g00002 419 MobiDBLite consensus disorder prediction 173 198 - -
Vivi1124g00002 419 Pfam Helix-loop-helix DNA-binding domain 264 307 IPR011598 GO:0046983
Vivi1124g00002 419 SMART finulus 263 312 IPR011598 GO:0046983
Vivi1124g00002 419 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 140 IPR025610 -
Vivi1124g00002 419 Coils Coil 296 323 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1124g00002 2 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 31.535 8.42e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1124g00002 bHLH-MYC_N 6.5e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1124g00002 - - psat:127075085 733.791