Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1121g00003 ATGTCTAGCAGAAGATCTCATTCTAGACAATCTGGTGTTTCCACTGAAATCTCTGATGATCAAATTAATGATCTCATCACCAAGTTGCAACAACTTATCCCTGAACTTGCAAGGCGTTCCAACAAGGTTTCAGCTGCTAAAGTGTTGCAAGAGACTTGCAATTACATCAAAAACTTGCATAGAGAGGTTGATGATTTAAGTGACCGATTATCACAACTTTTGGACACCATAGACCCTAACACTCCTCAAGCAGCTATCATTAGGAGCTTACTTATGTGA 279 0.3943 MSSRRSHSRQSGVSTEISDDQINDLITKLQQLIPELARRSNKVSAAKVLQETCNYIKNLHREVDDLSDRLSQLLDTIDPNTPQAAIIRSLLM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1121g00003 92 CDD bHLH_AtPRE_like 17 76 - -
Vivi1121g00003 92 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Vivi1121g00003 92 FunFam Transcription factor ILI6 7 88 - -
Vivi1121g00003 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 84 IPR036638 GO:0046983
Vivi1121g00003 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vivi1121g00003 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Vivi1121g00003 92 Coils Coil 56 76 - -
Vivi1121g00003 92 Gene3D - 20 86 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1121g00003 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 65.957 3.20e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1121g00003 HLH 4.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1121g00003 - - gmx:100791371 139.428