Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1116g00001 ATGAAGTTCAGCGCAGCTGTCAATAAGAGTCAGGGGAAAATAACTAGAAAGGACCAAAGCTTGCACAAGTTGGTTTTTCAAGCATTGGAACATAATGCTAATGTGACATACATTGTTCGTGGAGAGAAACTATTGGATGGTAAAATAGACAAAGATACCCCTGGAATTATGTGTAGTTGCTGTAACAATGTGGTTAGCCCTTCTACATTTGAAGCACATGCTGGCTGGGCATCCCGACGCAAGCCTTACCGGCACATATTTGCCGGTGAAGTCTCACTACATGAGTTGTCCATTTCTATGTTGAAAAAGCAGACAATTTCTGTGAGTACCGATAGCGATGGCCGTTGCAGTATTTGTGAACAAGGAGGACATCTTTTATGCTGTGATGGATGCCCAAGAGCTTTCCACTTAGAATGTGTGCCTCTTGAAACCGAACCGGGTCGCATTTGGTACTGCAAATATTGCTGTCATAATGTAAACCATAACGAAAAACGTGAAGGGCGTAGCGCAAAAGGTCGGGCAACTCGAAGGGTTTCGGGGAAGAGAGCCCGGAGAGGCCCCCTTACGGTAAATGATCTCGATATTGTCGACGGTGGATGTCAACTGTGCAGGGAAGATGATTTCGAGCTAGTAGATTTTGGTCCTCGGACAGTAATTATATGTGACCAGTGTAATAAGGAATTTCACATAGGGTGTTTGAAGGATCATAAGATCGAAAACCTAGAGAAATTACCTGAAGGGGACTGGTTCTGCGGCTCGGAATGTCTTCAAGTTCGGGCTTTTTTGCAGAATTTAGTGAATCGCGGGGACGCACCAGTTTCAGATTCCCTCCTAAGTTTGATTAAAAAGAAGCGTGAGCAAAAAGGTGTAGAAACTGATTCTGTCCTTGATGTAAAATGGAGGATTCTGAACTGGAAGTTGCTTGCCTCTGAAGAAATTCGGGCGCTGCTTTCGAAGGCTGTTGCTATCTTTCATGAACAATTTGATCCCATAGTGGATGCTGAAACAGGCGCAGATTTCATTCCGTCAATGCTTTATGCGAGGACCCTCAAGGATCAGTATTTTGGAGGAATGTATTGTGCAGTGCTCACTGTCAACCAAAAGGTTGTATGCGCGGGGACATTCCGTTTGTTCGGGAGAGAAGTGGCGGAGCTTCCCTTAGTTGCAACTCATGGAGCTAGCCAAGGAAAGGGTTACTTCCAAGCCCTGCTTGCCTGCATCCAGGGCGTGCTTGGAGAGTTAAGAGTGGGACGGTTATTCTTACCGGCTGCTCATGAAGCTAAATCATTATGGACTAGGAAATACGGGTTTATGGCGCTAGACCAAGATGAGATGAATTTTATCACAAGATTGTACCGCTTGATGATGTTTAAAGGGGCAGCATTACTGCAGAAGCCGGTTCCTCGGCCCGTCATAACCGAGTGCGTTGAAGAAGATCCATTTGAAGAAGGTGCATGA 1458 0.4547 MKFSAAVNKSQGKITRKDQSLHKLVFQALEHNANVTYIVRGEKLLDGKIDKDTPGIMCSCCNNVVSPSTFEAHAGWASRRKPYRHIFAGEVSLHELSISMLKKQTISVSTDSDGRCSICEQGGHLLCCDGCPRAFHLECVPLETEPGRIWYCKYCCHNVNHNEKREGRSAKGRATRRVSGKRARRGPLTVNDLDIVDGGCQLCREDDFELVDFGPRTVIICDQCNKEFHIGCLKDHKIENLEKLPEGDWFCGSECLQVRAFLQNLVNRGDAPVSDSLLSLIKKKREQKGVETDSVLDVKWRILNWKLLASEEIRALLSKAVAIFHEQFDPIVDAETGADFIPSMLYARTLKDQYFGGMYCAVLTVNQKVVCAGTFRLFGREVAELPLVATHGASQGKGYFQALLACIQGVLGELRVGRLFLPAAHEAKSLWTRKYGFMALDQDEMNFITRLYRLMMFKGAALLQKPVPRPVITECVEEDPFEEGA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1116g00001 485 Gene3D - 306 450 - -
Vivi1116g00001 485 ProSitePatterns Zinc finger PHD-type signature. 116 155 IPR019786 -
Vivi1116g00001 485 PANTHER AUTOIMMUNE REGULATOR 6 467 - -
Vivi1116g00001 485 Pfam Tify domain binding domain 55 88 IPR032308 -
Vivi1116g00001 485 SUPERFAMILY FYVE/PHD zinc finger 192 252 IPR011011 -
Vivi1116g00001 485 ProSiteProfiles Zinc finger PHD-type profile. 113 158 IPR019787 -
Vivi1116g00001 485 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 346 443 IPR016181 -
Vivi1116g00001 485 SMART PHD_3 115 156 IPR001965 -
Vivi1116g00001 485 SMART PHD_3 199 255 IPR001965 -
Vivi1116g00001 485 SUPERFAMILY FYVE/PHD zinc finger 102 160 IPR011011 -
Vivi1116g00001 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 258 IPR013083 -
Vivi1116g00001 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 184 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1116g00001 13 467 PHD Transcription Factor Family AT2G36720 46.983 5.65e-135 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1116g00001 - - vvo:131639868 1000.73