Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1115g00001 ATGGGTGGTGGTTTCATGATACAAGAGGGAAGTTCCGTAAAAGCAACAGAAATAATTGCTCAGATACCAATAAGTGAGGGTTATTTGAGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAGTCGAATCTCCCGCTCCTGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATAGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCTACAGATACGATTCTCAATCAACAGGGACAAAATGTAGTATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTAGTAAATACTTTACAAGACAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAAAAGCAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATACCGGAGCAGCTCTGGCTGAATATTTTATGTATCGTGAACGTCACACTTTAATCATTTATGACGATTTCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAAGTCGCGAAGCTTATCCCGAAGATGTTTTTTATTTACATTCGCATCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTCTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATTTGCTGATTTATTCAATGCTGGGATCAGACCTGCAATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCTCTTCAGATCTCGATAAAGCTACGCAAAATCAATTGGCAAAAGGTCGACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAACAGATAATAACTATTTATACTGGAATGAATGATTATCTTGATTCATTAGAAATTGAACACGTAAGGAAATGTATCGTTGAGTTACGGGCTTATTTAAAAACGAATAAACCTAAATTCAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCAAGAATATGAGCATCATCTGGGTTCCCGTCCATCAATACGTCCAAGTCGTCAATTAA 1293 0.396 MGGGFMIQEGSSVKATEIIAQIPISEGYLSRVVNALAKPIDGRGEISASESRLVESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVVCVYVAIGQKASSVAQVVNTLQDRGAMEYTIIVAEKANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDFSKQAQAYRQMSLLLRRPPSREAYPEDVFYLHSHLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFSSDLDKATQNQLAKGRRLRELLKQSQSAPLTVEEQIITIYTGMNDYLDSLEIEHVRKCIVELRAYLKTNKPKFNEIISSTKTFTGEAEAKNMSIIWVPVHQYVQVVN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1115g00001 430 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 297 417 - -
Vivi1115g00001 430 FunFam ATP synthase subunit alpha 297 426 - -
Vivi1115g00001 430 Pfam ATP synthase alpha/beta chain, C terminal domain 296 413 IPR000793 GO:0015986
Vivi1115g00001 430 NCBIfam F0F1 ATP synthase subunit alpha 1 418 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vivi1115g00001 430 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 74 289 IPR000194 GO:0005524
Vivi1115g00001 430 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 417 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vivi1115g00001 430 FunFam ATP synthase subunit alpha 19 296 - -
Vivi1115g00001 430 Hamap ATP synthase subunit alpha [atpA]. 1 426 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vivi1115g00001 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 295 IPR027417 -
Vivi1115g00001 430 Gene3D - 19 296 IPR027417 -
Vivi1115g00001 430 Gene3D - 297 419 IPR038376 -
Vivi1115g00001 430 CDD F1-ATPase_alpha_CD 19 292 IPR033732 GO:0032559
Vivi1115g00001 430 ProSitePatterns ATP synthase alpha and beta subunits signature. 280 289 IPR020003 GO:0005524
Vivi1115g00001 430 CDD ATP-synt_F1_alpha_C 300 413 IPR000793 GO:0015986
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1115g00001 11 302 Primary Pumps ATPases(2) AT4G38510 27.832 1.00e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1115g00001 K02111 - gmx:3989298 708.368