Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1111g00002 ATGACTAGGAAGAAGGTGAACCTTGCTTACATTACCAATGACTCAAAGAGGAGGGGAACATTCATGAAAAGAAAAAATGGTTTAATAAAAAAGATTGATGAAATAAGCACCCTATGTGGGATTGAAGCATGTGCTGTAATCTTTGGTGAAAACGATCCGCAGCCAGAGGTTTGGCCATCTCCACAGGGTGTCCAAAATGTATTATCAAGGTTTAAGAGATTACCTGAAGTGGAACAAAGCAAAAAAATGTTGAATCAAGAAAGTTTCTTGAAGCAAAAGATTGAAAAAGCACAAGAACAACTAAACAAACAAAAGATTGACAACAAAAGGAAGGAAATGACACATCTGATGTTTCAATGCCTTGATGCTGGTCAGATATTTGAAAGTGTCAACATGAATGATCTCAATGATCTCTCATGGTTGATTGATCAAAACTTGAAACATCTCGAAAGGAGAATCAATGAGACTCAAGTCAATGAAGTTGTCGAAAACGGAGTAGAAAATTTTAATGGAATGGAGCAAGGAATGGTGAACAATGTTGATGTTATGCAAAGAAATAATTCGTCCATGGAGTTCAACAACAATCAGGGTGATATATTACCATTTCAAAATGGTAATTATCTAGCACATGGCTTTTGGCCTTAA 645 0.3597 MTRKKVNLAYITNDSKRRGTFMKRKNGLIKKIDEISTLCGIEACAVIFGENDPQPEVWPSPQGVQNVLSRFKRLPEVEQSKKMLNQESFLKQKIEKAQEQLNKQKIDNKRKEMTHLMFQCLDAGQIFESVNMNDLNDLSWLIDQNLKHLERRINETQVNEVVENGVENFNGMEQGMVNNVDVMQRNNSSMEFNNNQGDILPFQNGNYLAHGFWP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1111g00002 214 Coils Coil 80 114 - -
Vivi1111g00002 214 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi1111g00002 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1111g00002 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1111g00002 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1111g00002 214 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi1111g00002 214 PANTHER MADS BOX PROTEIN 3 154 - -
Vivi1111g00002 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi1111g00002 214 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vivi1111g00002 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi1111g00002 214 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vivi1111g00002 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1111g00002 1 153 Type I MADS-box Gene Family AT5G48670 57.516 3.09e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1111g00002 SRF-TF 5.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1111g00002 - - vvo:131658510 351.288