Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1111g00001 ATGAAGAAATTTAATGAACTCAGCACCCTTTGTGGCATAGAAGCTTGTGCAATAATCTATGATGAAAACAATCCTCAACCAGAGGTTTGGCCATCTTTCTCACAAGTAAGAAGGGTGTTGTTCAGGTACATGAGTTTGCCGGATCATGAACGAAGCAAGAAGATGGTTAATTTAGAGACCTACTTGATGCAAAGCATTGAGAAAGCTCAAGAGTTGTTGAGGAAACAAATGGAAGATAACCAAAAGAAGGAAATAGCCGATTTAATCGATCGGTTTATTCATACCGGTGAATGTAATATGGGAAATATGAACCTGAATGATGTAACATTTTATATTGATAAGAATCTGAAGCAAATCGAGAAGAGGATGAATTCAATGGAAATCTAA 387 0.3643 MKKFNELSTLCGIEACAIIYDENNPQPEVWPSFSQVRRVLFRYMSLPDHERSKKMVNLETYLMQSIEKAQELLRKQMEDNQKKEIADLIDRFIHTGECNMGNMNLNDVTFYIDKNLKQIEKRMNSMEI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1111g00001 128 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Vivi1111g00001 128 Gene3D - 1 69 IPR036879 GO:0003677|GO:0046983
Vivi1111g00001 128 CDD MADS_SRF_like 1 57 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi1111g00001 128 Coils Coil 63 86 - -
Vivi1111g00001 128 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 24 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1111g00001 5 123 Type I MADS-box Gene Family AT5G48670 41.732 3.46e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1111g00001 SRF-TF 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1111g00001 - - psat:127080461 211.075