Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi109g00005 ATGATATCTCTGATTCATTCATGTTCTTTGATTGCAACAATAATAATTGTTGTTACAACACAAATCATTGTAGGAGTAAATTCCTTTTTAGAATCTGATAAGATAAGCAGTTTACCTCAGCAGCCAAAAGTGGAATTCCAGCAATATGCTGGTTATATTACAGTTGATGAAGTGCAGAAAAGATCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCGGCTTCTAAACCAGTTGTGCTTTGGTTAAATGGAGGGCCTGGCTGTTCTTCTGTTGGAGTTGGTGCTTTTGTGGAGCATGGACCATTCAAACCAACTCAAAATGGTCTTATTAAAAATGATTACAGTTGGAACAAAGAGGCAAATATGCTGTACTTGGAATCACCTGTTGGTGTTGGTTTCTCATATTCTGCCAATGAATCATTCTATGACTATGTCAATGATGAAATGACAGCAAAGGATAACCTTGTCTTTCTACAACATTGGTTCACTAAATTTCAAGAGTACAAAAATAATGATTTCTTTATCACTGGCGAGAGCTATGCAGGTCACTATGCACCTCAACTTGCACAACTCATTCTTCGAAGCAAAAGTAAAAGCAAAAGCAAAATCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTTGAAACCAACACAGATTTCAACTCGAGAGCTGAGTTTATCTGGTCTCATGGACTAATATCAGATGCAACCTATGAATCCTTCACAAAAATATGCAACTATTCCCAAATTAGAAGAGAATATCAAAATGGAGCACTTACTCCCATTTGTGCAAGAGTGAATAGGCTAGTCTCAATGGAGTTAAGTAGATATGTTGATCCGTACGATGTTACTCTTGATATCTGTCTGCCATCTGAAAAACAACAGGCATATAGGCTAACTCAACTGCAAGAGGGAGATAAGATAGATGTTTGTGTGGAAGATGAAACAATCACATACTTGAATAGAAAAGAAGTTCAAGAAGCTCTCCATGCTAAGCTTGTAGGGATCATCACCACATGGTTTACTTGTAGTGAAGCTCTCAAATATGACATGCGAAATCTAGAGATCCCAACTATATCAATTCTAGGGACACTGGTTAAATCAGGTGTAAGAGTTCTAGTATTCAGTGGAGATCAAGATTCAGTTATACCTTTAACCGGAACGCGTTCTTTAGTGAATGGATTAGCCAAGGACATTGGGTTGAACACAACAGAGTCCTATAGAGCTTGGTTTAATGAAAGACAGATTGGTGGATGGACACAAGTATATGGTAGTAACATTTTATCATTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGTTGTTTAAGGCATTTTTGGAAGGAAAGTCACTTCCAACTATTGTCTGA 1404 0.3775 MISLIHSCSLIATIIIVVTTQIIVGVNSFLESDKISSLPQQPKVEFQQYAGYITVDEVQKRSLFYYFVEAEVEPASKPVVLWLNGGPGCSSVGVGAFVEHGPFKPTQNGLIKNDYSWNKEANMLYLESPVGVGFSYSANESFYDYVNDEMTAKDNLVFLQHWFTKFQEYKNNDFFITGESYAGHYAPQLAQLILRSKSKSKSKINLKGIAIGNPLLETNTDFNSRAEFIWSHGLISDATYESFTKICNYSQIRREYQNGALTPICARVNRLVSMELSRYVDPYDVTLDICLPSEKQQAYRLTQLQEGDKIDVCVEDETITYLNRKEVQEALHAKLVGIITTWFTCSEALKYDMRNLEIPTISILGTLVKSGVRVLVFSGDQDSVIPLTGTRSLVNGLAKDIGLNTTESYRAWFNERQIGGWTQVYGSNILSFATIRGAAHEAPFSQPGRSLVLFKAFLEGKSLPTIV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi109g00005 467 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vivi109g00005 467 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Vivi109g00005 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vivi109g00005 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vivi109g00005 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Vivi109g00005 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vivi109g00005 467 Gene3D - 361 460 - -
Vivi109g00005 467 SUPERFAMILY alpha/beta-Hydrolases 40 463 IPR029058 -
Vivi109g00005 467 Pfam Serine carboxypeptidase 42 460 IPR001563 GO:0004185|GO:0006508
Vivi109g00005 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 447 IPR001563 GO:0004185|GO:0006508
Vivi109g00005 467 FunFam Carboxypeptidase 28 464 - -
Vivi109g00005 467 FunFam Carboxypeptidase 360 460 - -
Vivi109g00005 467 Gene3D - 313 349 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi109g00005 321 463 Calmodulin-binding Proteins AT2G22960 30.070 4.29e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi109g00005 K16297 - gmx:100805028 731.865