Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi109g00004 ATGATGTCTCAGATTCACTCATGCTCTTTGATTGCAACAATAATAATTGTTGTTACAACACAAATCATTGTAGGAGTAAATTCCTTTCCAGAATCTGATAAGATAAGCAGTTTACCTCAGCAGCCAAAAGTGGAATTCCAGCAATATGCTGGTTATATTACAGTTGATGAAGTGCAGAAAAGATCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCGGCTTCTAAACCAGTTGTGCTTTGGTTAAATGGAGGGCCTGGTTGTTCATCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGACCATTCAAACCAACTCAAAATGGCCTTATTAAAAATGATTACAGTTGGAACAAAGAGGCAAATATGTTGTACTTGGAATCACCTGCCGGTGTTGGTTTCTCCTATTCTGCAAATGAATCATTCTATGACTTTGTCAATGATGAAATGACAGCAAAGGATAACCTTGTCTTTCTACAACAATGGTTCACTAAATTTCAAGAGTACAAAAATAATGATTTCTTTATCACTGGAGAGAGCTATGCAGGTCACTATGCTCCTCAACTCGCACAACTCATTCTTCAAACCAAAAGCAAAATCAATCTCAAGGGTATAGCAATAGGGAATCCTCTTCTTGATTTTAACACAGATTTCAACTCAAGAGCTGAGTTTATCTGGTCTCATGGACTGATATCAGATTCAACCTATGAATCCTTTACGAAAATATGCAACTATTCCCAAATTAGAAGACAACATGAAAATGGAGCACTGACTCCCATTTGTGCAAGAGTGAATAGGCTAGTCTCAATGGAGATAAGTAGATATGTTGATTCGTACGATGTTACTCTTGATATTTGTCTGCCATCTGAAAATCAACAAGCATATAGGCTAGTTCAACTGCAAGAGGGAGATAAGATAGATGTTTGTCTGGAAGATGAAACAATCACATACTTGAATAGAAAAGAAGTTCAAGAAGCTCTCCATGCTAAGCTTGTAGGGATCATCACCACATGGTTTACTTGTAGTGAAGTTCTCAAATATGACATGCGAAATCTAGAGATCCCAACTATATCAATTCTAGGGACACTGGTTAAATCAGGTGTAAGAGTTCTAGTATTCAGTGGAGATCAAGATTCAGTTATACCCTTAACCGGAACGCGTTCTTTAGTGAATGGATTAGCCAAGAACATTGGGTTGAACACAACAGAGTCCTATAGAGCTTGGTTTAATGAAAGACAGATTGGTGGATGGACACAAGTATATGGTAGTAACATTTTATCGTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGTTGTTTAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTGTCTGA 1392 0.3793 MMSQIHSCSLIATIIIVVTTQIIVGVNSFPESDKISSLPQQPKVEFQQYAGYITVDEVQKRSLFYYFVEAEVEPASKPVVLWLNGGPGCSSVGAGAFVEHGPFKPTQNGLIKNDYSWNKEANMLYLESPAGVGFSYSANESFYDFVNDEMTAKDNLVFLQQWFTKFQEYKNNDFFITGESYAGHYAPQLAQLILQTKSKINLKGIAIGNPLLDFNTDFNSRAEFIWSHGLISDSTYESFTKICNYSQIRRQHENGALTPICARVNRLVSMEISRYVDSYDVTLDICLPSENQQAYRLVQLQEGDKIDVCLEDETITYLNRKEVQEALHAKLVGIITTWFTCSEVLKYDMRNLEIPTISILGTLVKSGVRVLVFSGDQDSVIPLTGTRSLVNGLAKNIGLNTTESYRAWFNERQIGGWTQVYGSNILSFATIRGAAHEAPFSQPGRSLVLFKAFLEGKSLPTIV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi109g00004 463 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vivi109g00004 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vivi109g00004 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vivi109g00004 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Vivi109g00004 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vivi109g00004 463 SUPERFAMILY alpha/beta-Hydrolases 40 459 IPR029058 -
Vivi109g00004 463 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Vivi109g00004 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 443 IPR001563 GO:0004185|GO:0006508
Vivi109g00004 463 FunFam Carboxypeptidase 356 456 - -
Vivi109g00004 463 Gene3D - 309 346 - -
Vivi109g00004 463 FunFam Carboxypeptidase 28 460 - -
Vivi109g00004 463 Gene3D - 357 456 - -
Vivi109g00004 463 Pfam Serine carboxypeptidase 42 456 IPR001563 GO:0004185|GO:0006508
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi109g00004 317 459 Calmodulin-binding Proteins AT2G22960 30.070 8.22e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi109g00004 K16297 - gmx:100805028 754.207