Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1096g00007 ATGTGCAGCGGGATGGGGAATGAGAATAAAGAAGGTCGGCGTCAGGATGTTTATTCTTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGGTTCAAAGACGCGGTCGAAAACGTGGGTTATGATGTCGATGAGGTTGGTTTGTGGTATGGGAGAAGGGTTGGTTCGAATAAATTGGGTTATGTAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGCTTGAATGTTTCGGCTTATATTCTTGGAACGGGTCGCGTTGATGTTAATCGGCGTAGTGGATCGGACGGTGCTACTGCTCTTCATTGTGCTGTTGTTGGGGGTTCTGTTGCTTCTGCTGAGATTGTGAAGCTTTTGCTTGATGCGTCGGCGGATGCTGGTGCTGTTGATGCGAACGGTAAACGGCCTGTTGACTTGGTTGTCTCGGTGGGGAATTCTATGTTTGATCCGAGGAAGAGGATGTTGCAAGCTCTTCTGGAGGGTACGGGCGGGGCTGATCAGACATGTGTTATATTTCCGGAGACGATTGATGGTGTCGATGAATATCAAAGGCAAGATTTAAACTCGCCTCGTTTTTCAAAAGATTATCCTCTTGATCTTTCTCTTCCTGATATAAAGAACGGAATATTTAGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCTAGGGCGTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGGGAAAATGCAAGGCGACGCGATCCGAAGAAATATCTTTATAGTTGTGTCCCTTGTCCCGAGTTTCGCAAAGGATCTTGCAGCAAAGGAGATTCGTGTGATTATGCACATGGTATTTTTGAGTGTTGGCTTCATCCTGCACAATATCGGACACGTCTTTGCAAGGACGAGAGCGCGTGCACAAGAAGAGTTTGCTTCTTTGCTCACAGGGTTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATCCCGTCTCCGAGGTCATATTACAGTAGTGCTTCCGCATTAGAGATGGGTTCACTTAGTCCTACTGCGCTGAGTTCTCCGTCTGGTTTGATGCCGCCATCGTCAACACCGCCTTTGACTCCATCTGGAGCGTCTTCTCCAGTTTCTGCGGCAGCCATGTGGCAGGCACAGTCTAATGTTTCCGTGCCTACCCTTCAGCTTCCCAGAAGCAGGTTGAATTTGGCAAGAACTGCTAGAAACGTTGATTCAGATATCGCAATGATTAGGGCTGAAACTCAGCGGCGAAGCCAGCAACTAATGATGGACGAGATATCCGGTCTTTCCTCACCTTCCAACTGGAAAAATTCCATTCCTAACAGTCCATCTTTTCCGGTTTCTTTGAACAGTCAAACTACCAGCGAACTAAATAGGTTTTCGGGCGTGAAGCCTAATAACCTTGAAGACATTTTCGGATCACTTGATCCATCAATGTTTCATAAATTCCACGGAATGTCACTCGATGCTGCAGGAACTCTGTTACAATCTCCAACTGGAATCCAAATGCGTCCGAATATGAATCAGCAAAACTACACTTCGGGCCATTCTACATCCAGTGTGATTGGATCGCCAACTAGATTTGATCTATCCGGGGAGTTATCTGCAGCAGCTTTAAATTCAAGAGCTGTCGCCTTTTCCAAGCGGAGCCAGAGCTTTATCGAGCGCAGCGTGGCGAACCGTCCTTCCGAGCTTCTTTCTCCTGTCAATCCTTACGCTTTCTCCAACTGGGGATCACCCGATGGAAAACTGGATTGGACCATACACGGAGAAGAACTTAACAAGCTGAGGAAATCGTCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAACTACACAGGAAAATAACAACGAACCAGACGTCTCTTGGGTTAATTCACTTGTGAAGGATGCTACGCCGCAGGAATCTAGCCGATTTAGCGATGAAAATCAGAAACGGAAACTGCAATACAATCTTAACAACGGAACAGACACGATTCCGGCTTGGTTGGAGCAATTGTACAAGGATCAAGAACAAGCTGTGCATTGA 2043 0.4645 MCSGMGNENKEGRRQDVYSLLEFSAADDVIGFKDAVENVGYDVDEVGLWYGRRVGSNKLGYVERTPLMVAAMFGSLNVSAYILGTGRVDVNRRSGSDGATALHCAVVGGSVASAEIVKLLLDASADAGAVDANGKRPVDLVVSVGNSMFDPRKRMLQALLEGTGGADQTCVIFPETIDGVDEYQRQDLNSPRFSKDYPLDLSLPDIKNGIFSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYLYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHRVEELRPLYASTGSAIPSPRSYYSSASALEMGSLSPTALSSPSGLMPPSSTPPLTPSGASSPVSAAAMWQAQSNVSVPTLQLPRSRLNLARTARNVDSDIAMIRAETQRRSQQLMMDEISGLSSPSNWKNSIPNSPSFPVSLNSQTTSELNRFSGVKPNNLEDIFGSLDPSMFHKFHGMSLDAAGTLLQSPTGIQMRPNMNQQNYTSGHSTSSVIGSPTRFDLSGELSAAALNSRAVAFSKRSQSFIERSVANRPSELLSPVNPYAFSNWGSPDGKLDWTIHGEELNKLRKSSSFGFRSSNTPLTTQENNNEPDVSWVNSLVKDATPQESSRFSDENQKRKLQYNLNNGTDTIPAWLEQLYKDQEQAVH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1096g00007 680 FunFam Zinc finger CCCH domain-containing protein 66 213 281 - -
Vivi1096g00007 680 PANTHER UNKEMPT FAMILY MEMBER 22 635 IPR045234 -
Vivi1096g00007 680 Gene3D - 102 161 IPR036770 -
Vivi1096g00007 680 Gene3D - 10 101 IPR036770 -
Vivi1096g00007 680 MobiDBLite consensus disorder prediction 348 372 - -
Vivi1096g00007 680 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Vivi1096g00007 680 SUPERFAMILY Ankyrin repeat 49 146 IPR036770 -
Vivi1096g00007 680 ProSiteProfiles Ankyrin repeat profile. 97 132 IPR002110 GO:0005515
Vivi1096g00007 680 Pfam Ankyrin repeats (3 copies) 62 128 IPR002110 GO:0005515
Vivi1096g00007 680 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Vivi1096g00007 680 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Vivi1096g00007 680 ProSiteProfiles Ankyrin repeat region circular profile. 97 131 - -
Vivi1096g00007 680 MobiDBLite consensus disorder prediction 603 625 - -
Vivi1096g00007 680 SMART ANK_2a 97 129 IPR002110 GO:0005515
Vivi1096g00007 680 SMART ANK_2a 62 92 IPR002110 GO:0005515
Vivi1096g00007 680 Gene3D - 255 318 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1096g00007 19 675 C2H2 Transcription Factor Family AT5G12850 38.764 1.93e-138 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1096g00007 Ank_2 5.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1096g00007 - - aprc:113846970 962.214