Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1093g00011 ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTGAAGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCAGAGGAAGATCAGGAAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGGATAAACAGAAATCCTTTCACTGAGGAAGAAGAAGAGCGTCTAATAACATCTCATCGGATTCATGGAAATCGATGGGCGGTAATTGCGAGACACTTCCCCGGCCGGACGGATAACGCTGTGAAGAATCATTGGCATGTGATGATGGCGAGGATTCGTCGCGAAAGGTACAAGATATATGCAAAAGGTCCTCTTGATCATCACATAATTTTCTCTCCAAATGATCATCAAACAAACTTTGAGACAAGAAATCACCCAAGTGTCTCATATAACCGTTTCCAATTTTCGAATTTTCGGTTTCAAGATCCAAGTTCTTGTTCCACAATGCTTCAAGATAAAACTCAATCAATAGAGTTCTATGATTTTCTTCAAGTAGATTCCAATAAAAGTGAAGTTACTGATAATGCTAGAAGAGATGATGAGGAAGTGAATCAAGATGTTGTGGAGCTGCAGACCAAAGAAAAACATGTTCCATTCATTGATTTTTTGTCTACTTCAAGCTGCTAA 663 0.3997 MCSRGHWRPSEDEKLKELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPLDHHIIFSPNDHQTNFETRNHPSVSYNRFQFSNFRFQDPSSCSTMLQDKTQSIEFYDFLQVDSNKSEVTDNARRDDEEVNQDVVELQTKEKHVPFIDFLSTSSC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1093g00011 220 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vivi1093g00011 220 Gene3D - 4 55 - -
Vivi1093g00011 220 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Vivi1093g00011 220 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vivi1093g00011 220 FunFam MYB transcription factor 4 55 - -
Vivi1093g00011 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Vivi1093g00011 220 Gene3D - 57 122 - -
Vivi1093g00011 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Vivi1093g00011 220 PANTHER MYB PROTEIN-RELATED 4 168 - -
Vivi1093g00011 220 CDD SANT 7 48 IPR001005 -
Vivi1093g00011 220 CDD SANT 58 101 IPR001005 -
Vivi1093g00011 220 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Vivi1093g00011 220 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vivi1093g00011 220 SMART sant 55 103 IPR001005 -
Vivi1093g00011 220 SMART sant 3 52 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1093g00011 1 219 MYB Transcription Factor Family AT1G17950 54.321 1.02e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1093g00011 Myb_DNA-binding 1.5e-15 CL0123