Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi108g00004 ATGCTTGAGTTCATCAAGTGTGTACCCCTTTGCCTCTTGTTTTCAGTGTACTTTTGTGCACTCATTACTGACCCTTCTTCCATGACACTTTCACCATCTTTACAAAGCAGAGAAGCAAGTGCTTTGTTGAAGTGGAAAGAAAGTCTTGACAGCCAAAGCCAAACTTCGTTGTCTTCATGGAGTGGCAATAATTCATGCAACTGGCTTGGAGGTTCGTGCAATGAAGATTCCATGTCTGTCTCAATAGTAAATCTCACAAATATGAGACTGAAAGGTACGCTTCAAAGTTTTAACTTCTCATCACTTCCAAATATTGTCACTTTTGATCTTCGTGGCAACTTGTTGGATGGAATTATCCCACCTACAATTGGAAAATTATTAGAGATAAACAATCTACTTCTTAATGACAATAATCTTTCTGGTTCTATTCCTAAAGAAATTGGAATGATGAGATCTATTATATACATAGATTTGTCAAATAATAATCTAACTGGTAAAATTCCAGATGCAATTGGAAACTTAAGCCATTTAGGATATCTTGGCTTTGCCGTAAACCATCTCAGTGGGACAATTCCTATTGAAATGTGTATACTTGGTAATTTGGAAACATTCAATGTATATGATAATAATCTATCTGGTAAAATTCCAGCTGCAATTGGAAACTTAAGCCATTTACGATATCTTGGCTTTGGGGGAAACCATCTCAGTGGGACAATTCCGATTGAAATGAATATACTTGGTAATTTGGAAACATTCAGTGTATTTGATAATAATTTTACAGGTCAGTTTCCTCAGAACATTTGCGTTGGTGCAAACCTGAAAAATATTGGTGCTTACAATAACCATTTCATAGGCCGAGTTCTAAGGAGTTTGAAGAATTGTTCAAGCCTTATTAGACTTAGGCTTGAAAATAACCATTTTGAGGAAAACATAACTGATTTTTTTGGTGTAAACCCAAATTTGAAGTTCATGGGATTGGATGACAATAATTTTTATGGCCATCTTTCATCTAACTTGGGAAAGTTTCATAACTTGACAGATCTTCACATTTCCCAAAATCATATCTCCGGTTGTATACCATCCGAACTCAGTAAAGCAACCAACTTATATTCAATTGACTTATCTTCAAACCAACTTACAGGAAATATTCCAAAGGATTTAGGCAACTTGACCAAATTGGGAAGACTCTTTTTACGCAACAACCATCTTTCTGGTAATGTTCATGTGAAAATAGCATCGTTAAAGGAACTTGAAATCTTAGATGTTGCAGCAAATAATCTAAGCGGTTTCATCACAAAAGAACTTGTCAGTTTATCTAAATTATTCAACTTAAGTTTGAGCCACAACAAATTCATTGGAAATATTCCTGATGAGTTTGGTGAGTTTCAATCACTTCAAAGTCTTGATCTGAGTAGAAATATTTTGAATGGAACCATACCACCAATGCTTGGAAAAATGAAATTCTTAGAAACATTGAATATTTCACATAATAATTTTTCTGGATTTATCCCTTCTTCCTTTGATCAGATGGTTAGCTTGACATTTGTTGATATATCTTATAACCAATTGAAAGGTCCACTTCCAAATATGCGAGCATTCAATAATGCAACAATTGAAGTGTTGAGAAATAATACAGACTTGTGTGGTAATGTTTTTGGCTTGAAGCCTTGCAGTGGATATCCTAATCATAAGACTAAGAATCTGATCTTATTGATAGTTTTACCTCTAGCACCAGGAACTCTAATGCTAGCATTCGTTTGTTTCAAGTTCTCAAAATATTTATGTCGAATGCGAACCACAAGAGACAACCAGGATGGTGGAATTATCGTTGCTCCGAATAATGTATTCACAATATGGAGTTTTGATGGTAAAATGGTGTATGAGAACATTATTGAAGCAACAGAAGAGTTTCATGACAAATATCTCATTGGAGTAGGAACACATGGAAGTGTCTACAAAGCTGAGTTGCACACAGGTCAAATTGTTGCTGTTAAGAAAATTCATTTAGCAACAAATCGAGAAAATTCTAATATAAGATGTTTCACAAGTGGGATTCAAGCTCTGACAGAAATTCGACATCGTAACATTGTGAAGCTATATGGATTTTGTTCACATTCACACGTGCCGTTTTTGGTCTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAACAAGCAATTGAATTTGATTGGAATAAGAGGGTGAATGTCATTAAAGATGTAGCAAATGCTTTATGCTATATGCACCATGATTGCTTCCCTCCGATTGTTCACCGTGATATATCAAGCAAGAATATACTTATGGATTTAGAATATGTGGCTCGTGTGTCTGACTTTGGAACAGCTAAGCTTCTTAATCCTAATTCAGCCAATTGGACCTCATTTGTAGGCACATTTGGATATTCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGATGTGTACAGTTTTGGAGTATTAGCATTGGAAATACTTCATGGAAAACAACCTGGAGACATTATATCTAATAGTATACAATGGAACAATATGGCGGGATCAAAACTTGATACTATGTCATTGATGGATATGTTGGACCAACGTCTCCCTCGTCCAATGAATACTAAAGCTAAGCAGTTACTATCCGTTACAAAGACGCTACTTTCTTGCTTGGATGAAAGTCCACGATCTCGTCCAACCATGGAGCAGGTTTCCATGGAGATTTCAATATCATAA 2739 0.3556 MLEFIKCVPLCLLFSVYFCALITDPSSMTLSPSLQSREASALLKWKESLDSQSQTSLSSWSGNNSCNWLGGSCNEDSMSVSIVNLTNMRLKGTLQSFNFSSLPNIVTFDLRGNLLDGIIPPTIGKLLEINNLLLNDNNLSGSIPKEIGMMRSIIYIDLSNNNLTGKIPDAIGNLSHLGYLGFAVNHLSGTIPIEMCILGNLETFNVYDNNLSGKIPAAIGNLSHLRYLGFGGNHLSGTIPIEMNILGNLETFSVFDNNFTGQFPQNICVGANLKNIGAYNNHFIGRVLRSLKNCSSLIRLRLENNHFEENITDFFGVNPNLKFMGLDDNNFYGHLSSNLGKFHNLTDLHISQNHISGCIPSELSKATNLYSIDLSSNQLTGNIPKDLGNLTKLGRLFLRNNHLSGNVHVKIASLKELEILDVAANNLSGFITKELVSLSKLFNLSLSHNKFIGNIPDEFGEFQSLQSLDLSRNILNGTIPPMLGKMKFLETLNISHNNFSGFIPSSFDQMVSLTFVDISYNQLKGPLPNMRAFNNATIEVLRNNTDLCGNVFGLKPCSGYPNHKTKNLILLIVLPLAPGTLMLAFVCFKFSKYLCRMRTTRDNQDGGIIVAPNNVFTIWSFDGKMVYENIIEATEEFHDKYLIGVGTHGSVYKAELHTGQIVAVKKIHLATNRENSNIRCFTSGIQALTEIRHRNIVKLYGFCSHSHVPFLVYEFMEKGSLEKILKDDEQAIEFDWNKRVNVIKDVANALCYMHHDCFPPIVHRDISSKNILMDLEYVARVSDFGTAKLLNPNSANWTSFVGTFGYSAPELAYTMEVNEKCDVYSFGVLALEILHGKQPGDIISNSIQWNNMAGSKLDTMSLMDMLDQRLPRPMNTKAKQLLSVTKTLLSCLDESPRSRPTMEQVSMEISIS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi108g00004 912 FunFam MDIS1-interacting receptor like kinase 2 716 912 - -
Vivi108g00004 912 Pfam Protein kinase domain 637 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi108g00004 912 Gene3D Ribonuclease Inhibitor 79 245 IPR032675 -
Vivi108g00004 912 Gene3D Ribonuclease Inhibitor 246 559 IPR032675 -
Vivi108g00004 912 ProSitePatterns Protein kinases ATP-binding region signature. 643 666 IPR017441 GO:0005524
Vivi108g00004 912 SUPERFAMILY Protein kinase-like (PK-like) 618 906 IPR011009 -
Vivi108g00004 912 ProSitePatterns Tyrosine protein kinases specific active-site signature. 761 773 IPR008266 GO:0004672|GO:0006468
Vivi108g00004 912 Gene3D Transferase(Phosphotransferase) domain 1 716 911 - -
Vivi108g00004 912 SUPERFAMILY RNI-like 215 569 - -
Vivi108g00004 912 FunFam Nuclear pore complex protein NUP107 35 194 - -
Vivi108g00004 912 Pfam Leucine Rich Repeat 154 174 IPR001611 GO:0005515
Vivi108g00004 912 SUPERFAMILY L domain-like 37 309 - -
Vivi108g00004 912 Gene3D Phosphorylase Kinase; domain 1 611 715 - -
Vivi108g00004 912 Pfam Leucine rich repeat 464 523 IPR001611 GO:0005515
Vivi108g00004 912 ProSiteProfiles Protein kinase domain profile. 637 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi108g00004 912 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 247 560 - -
Vivi108g00004 912 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Vivi108g00004 912 FunFam Leucine-rich repeat receptor protein kinase MSP1 602 715 - -
Vivi108g00004 912 PANTHER LEUCINE RICH REPEAT KINASE 2 198 909 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi108g00004 90 809 Receptor kinase-like Gene Family AT4G08850 43.733 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi108g00004 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi108g00004 - - vvo:131634792 1181.39