Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1088g00001 ATGAGGATTTCCGTGGAGACAGTAGATGCATTGAACCATCTTCATGCTTCTCATATCATTCATAGGGATATTAAAACAAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGTAGCTGATTTTGGACGTTCGCGCCTCTTTCCTAAAGATCAAAGTCATGGTTTAACAATTCCACAACGGACATCAGGCTATGTAGACCCCGAGGACAATCAGACTAATGCACTTACTTACAAAAGTGATGTGTTCAGTTTTGGAGTGGTGTTGATTGAACTCATAACATCTTTGCGTGCTTATGATCGCAACAAAAAGGATGATGGTGTCAATCTATATGACATGGCTATTAAAAAAATTCAAGATCACACTTTGCATGATATTGTGGATCATACCCTCGGTTTTGATACAGATTCCATGGTAAAGCAAATGATTAATGGGGTTGCCGAGTTAGCACTTTCTTGTCTCCAAAGTTCCGGTGATATGAGACCGACAATGGAATCTGTGCTCCAATGTTTACAAAGTCTTAAGGATGTGAAAGAAATCCAACCTCAAGTAGCCGGCAGTTCTAGCCCAAATGATGAAATAGTGTTGCTGAATAATGATCTAGCTTGA 609 0.3908 MRISVETVDALNHLHASHIIHRDIKTSNILLDAEYHVKVADFGRSRLFPKDQSHGLTIPQRTSGYVDPEDNQTNALTYKSDVFSFGVVLIELITSLRAYDRNKKDDGVNLYDMAIKKIQDHTLHDIVDHTLGFDTDSMVKQMINGVAELALSCLQSSGDMRPTMESVLQCLQSLKDVKEIQPQVAGSSSPNDEIVLLNNDLA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1088g00001 202 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Vivi1088g00001 202 Gene3D Transferase(Phosphotransferase) domain 1 1 189 - -
Vivi1088g00001 202 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1088g00001 202 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1088g00001 202 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 180 IPR044652 GO:0004672
Vivi1088g00001 202 SUPERFAMILY Protein kinase-like (PK-like) 2 183 IPR011009 -
Vivi1088g00001 202 Pfam Protein kinase domain 3 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1088g00001 1 182 Receptor kinase-like Gene Family AT1G25390 51.648 7.31e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi1088g00001 Pkinase 8.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1088g00001 - - vvo:131639634 401.749