Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi107g00001 ATGTTCTCAAACTTTCAACAACAACACCACCATCACAACCTTTTTCAAACCTCTCGTGAATGCCAAACCTCAGAAGACGATGAAAGCCGAGGCAGCGGTGGGCCCGCCACATTAACACCCCACAAACCTTTCTCCGCAATAAGCGGAGGCAGCGACGGTGCTACTATTGAGATTGGCCGTCGGCCCAGAGGCCGTCCACCTGGCTCCAAGAACAAGCCCAAAGCCCCACTCATAATTACTCACGAGCCCGAGCCCGCGATGAACCCACACATTCTCGAAATCCCAGGAGGTAGCGACATAGTAGAAGCAATATCCCGGTTCAGTAACAGAAGAAAAACCGGGTTATGCATATTAACCGGTTCAGGTACCGTCGCTAACGTTACACTCCGTCAACCTTCGGCTCCTCCAGGCACCACCGTTATCTTCCACGGCCGTTTCAATATCCTCTCCATATCCGCCACCTTCTTCGTCCCATCGGAATCTTCGCCGTCATCGCCGCCGATCCATAAGGAATTCTCGATCTCCCTTGCTGGACCTCAGGGTCAGATTATTGGAGGGTTTGTCGTTGGGAGGTTGCTGGCTGCTGGTACGGTGTTTGTGATTGCTGCTTCGTTTAATAACCCTAGTTATCATAGGTTACCTTTGGAGGAGGATGTTCGGAATAATTCAGTTTCCGGCGGTTGTGATGAGAAGTCGCCACCGTTGTCCGGTGGTGAGAACTGTTTGTATAGCTGTCAACTTCCTTCTGATGTGATTTGGGCTCCAACGCCAAGAACGCTTTTCTGA 786 0.5127 MFSNFQQQHHHHNLFQTSRECQTSEDDESRGSGGPATLTPHKPFSAISGGSDGATIEIGRRPRGRPPGSKNKPKAPLIITHEPEPAMNPHILEIPGGSDIVEAISRFSNRRKTGLCILTGSGTVANVTLRQPSAPPGTTVIFHGRFNILSISATFFVPSESSPSSPPIHKEFSISLAGPQGQIIGGFVVGRLLAAGTVFVIAASFNNPSYHRLPLEEDVRNNSVSGGCDEKSPPLSGGENCLYSCQLPSDVIWAPTPRTLF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi107g00001 261 CDD DUF296 88 205 IPR005175 -
Vivi107g00001 261 ProSiteProfiles PPC domain profile profile. 84 226 IPR005175 -
Vivi107g00001 261 MobiDBLite consensus disorder prediction 13 27 - -
Vivi107g00001 261 PIRSF ESCAROLA 2 247 IPR014476 GO:0003680
Vivi107g00001 261 MobiDBLite consensus disorder prediction 1 75 - -
Vivi107g00001 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 226 IPR014476 GO:0003680
Vivi107g00001 261 FunFam AT-hook motif nuclear-localized protein 88 224 - -
Vivi107g00001 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 207 IPR005175 -
Vivi107g00001 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 217 - -
Vivi107g00001 261 Gene3D - 87 224 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi107g00001 52 258 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 57.143 8.32e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi107g00001 - - cam:101500910 390.193