Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1078g00007 ATGGGTCGCGCTAAAATAACGATGAAGTTCATCCAAAATCAAAAAACTCGAAAATTAGCTTTCATTAGGAGACATAATGGATTAATGAAAAAAGTTTCTGAGTTTTCTAGAAAGTTTGAAGTTGAAGCTTGTTTAGTTGTGTATGATGGCGATGATGGTAATGCTAGACCGATAACTTGGCCACAAGACTCAACAATTGTACACTCAATGCTTAAAAAGTATGAGCAACAAAAGATTGAGACAACTCCAAAGAAATTTGATGCGATTGACTATTTTGCGAATAGGAAAAATATGGTTGAAGTTGAGATTTCCAAATTGCACAAGAAGATTGTGAGGAACAAGTATCCAACATGGAGTCCATCTTTTCATACAATGGATGGAGAGCAACTTAAAGGCTTCATTGATATTGTAGATGCTAAGATTCAAGCTTGTAATCACAAAATTAGCATGCTGAAAAATATGCAACAAAGTGATAGAAATAATTTGATGCAAAACAAAGCTCAAGAGAATATCGCCTCCTCACATTCAAGTCAACTTGATTTCAGGCATAACATTCCCCAAATGAAAGATATCTCTAATGATCCTATGGAGCTAGTTAAAGGTAATCATACTAATGAGGCGATTAATTTCACTAATTATGTTAGTTTACCTCTTATTTCATCAACAAATCAAATTAATGAACCTGCAAAGTTAGATAATATGATGGTTGAACCTAATCAAGAATGGGCTAATGAACTTGATGAACTTCTACAACTAGATGATCGGGTGGTTGAATCTAAGAACTGGGCTTCTAACCTTTCCAATTTTAAAGAATGGGATAATCAACTAAATGGTGATATTGTGAATTTGAATAGTCAACCTGATTTATTTGCGTGGCAAGATATTTCATTTATGTCATAG 900 0.3367 MGRAKITMKFIQNQKTRKLAFIRRHNGLMKKVSEFSRKFEVEACLVVYDGDDGNARPITWPQDSTIVHSMLKKYEQQKIETTPKKFDAIDYFANRKNMVEVEISKLHKKIVRNKYPTWSPSFHTMDGEQLKGFIDIVDAKIQACNHKISMLKNMQQSDRNNLMQNKAQENIASSHSSQLDFRHNIPQMKDISNDPMELVKGNHTNEAINFTNYVSLPLISSTNQINEPAKLDNMMVEPNQEWANELDELLQLDDRVVESKNWASNLSNFKEWDNQLNGDIVNLNSQPDLFAWQDISFMS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1078g00007 299 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vivi1078g00007 299 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vivi1078g00007 299 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Vivi1078g00007 299 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1078g00007 299 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1078g00007 1 142 Type I MADS-box Gene Family AT5G55690 30.822 3.91e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1078g00007 SRF-TF 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1078g00007 - - vvo:131639524 610.142