Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1078g00004 ATGAACAAGAACAAGTTTCCTTTTACTCCTTCACAATGGCAGGAGCTTGAACATCAAGCCCTTGTTTACAAGTACATGGCTTCTGGTATCTCTATTCCTCCTGATCTTCTTTTTACAATCAGAAAAAGCTTTTTGGACTCTCCTATCTCTTCAAGACTCTTGCCTAACTCCCAACATCACTTTGGATGGAACTATCTGCAGATGGGTTTGGGAAGAAAGATAGATCCTGAGCCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAGAGACATATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTCTGAAAACAACATCAACAAATAATGCTTCATCATTTGCAAGCTCGTCAATCACCAAGAATAGTTCTTCTTTGTCTTTTGATACACAACAACACCAAAACTACCCTCAAAATTCTTGCTATGGTTCCAATTTGCAACATTCCTTTATGTATCCTCAGACAACATCAAGGGCATCAGCATCTTCTGGGATAGGTTTGTCGTTTGAAGACAATAATGGTTCCTTGTTTCTTGACAGTAACTCTTGCTCTCAGAATAATGGAGATTACAGGAACAGGTATGTGTATGGACAAAAAGAAGAGGTAGATGAGTATGCATTTTTCAAAGAACCTTCTGGCAGCACTACTATGAAAAGCTTCTCTGCTTCATCAATGGAACATGATCCATGGCAACTAACACCACTCACTATGAGTTCATCCTCCTCCTCTTCATCTTTGAGACAGAGGAGTTTCTCTTCTCTGTCCAATGATTACTCTTGCTTGCAACTTCAGAGCTTGAATGAACAGTCAAAACAGCAAGAACAAGAAGAGCCTCAGAAAATTGTTCATCGCTTCTTCGATGAATTGCCACACAAAGGGAGAGACCAATGGCTTGATTTGGATGATAAATCGTCTACTACTCAACTCTCGATTTCTATTCCTTCTTCTGCTCATGATTTTCCTACTTTCACTTCAAGAAATCACCATGATGGTTGA 1047 0.3954 MNKNKFPFTPSQWQELEHQALVYKYMASGISIPPDLLFTIRKSFLDSPISSRLLPNSQHHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTSTNNASSFASSSITKNSSSLSFDTQQHQNYPQNSCYGSNLQHSFMYPQTTSRASASSGIGLSFEDNNGSLFLDSNSCSQNNGDYRNRYVYGQKEEVDEYAFFKEPSGSTTMKSFSASSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSLSNDYSCLQLQSLNEQSKQQEQEEPQKIVHRFFDELPHKGRDQWLDLDDKSSTTQLSISIPSSAHDFPTFTSRNHHDG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1078g00004 348 PANTHER GROWTH-REGULATING FACTOR 5 7 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi1078g00004 348 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1078g00004 348 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1078g00004 348 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Vivi1078g00004 348 Pfam WRC 76 118 IPR014977 -
Vivi1078g00004 348 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1078g00004 7 118 GRF Transcription Factor Family AT3G13960 69.643 5.22e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi1078g00004 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1078g00004 - - gmx:100781613 458.759