Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1076g00002 ATGTCTTCCCTCCAATTCAACCTCCATCCCCTTCCTCCATCTCAATCTCCATCTCCACTACTCACCACCTCCAACATTTCTTCCTTCTCTCCCACTTCCCTCTCCATCTTCTACAACCACCACCACCTCCTCCGCTTCAATCTCAAAACCCTAAAAAACCACCGGATCTTCGCAATGTCTACTGACTCCACATTCAAAATGAACCTCAATGAGTATCTCGTCACTCTTGACAAGCCTTTAGGTATCCGATTCGCTCTTACCTCCGATGGCAAAATCATCGTTCACTCTCTCGCTAAAGGGGGTAATGCGGAGAAGTCCAGAATAATTATGGTGGGTGATACTTTGAAGAAAGCCGGTGATTCGTCTCAGAATAGTCTTGTCGAGATTAAAGACGTTGGAGATACACAGAAAGTGCTAAATGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCAGCATCTACATTTCCCATTCAACTACTCCATAATAAGACGAATGATCTTGAAATAGTGTATAATAGAGGTCGAGTTCCTGTTGTCACATGGAACAAGACACTATTAGCATCAAATTTACAATCCTCTGGTGACAGCTGTGGGAGTTCTGGATTTTCGATGTTCAACTCAAAGTTTCTTAATTCAAATGGAAGCAAGTTATTGGGCAATCAAAATCAACATGCTATCACCCATGGTGAAAGAAATTCCTTTACTGAACAAACAATACAACTTGCGTGTGTTTTCACTGAAGAAGCATGTGGAGATGGAGATTGGGCTCACGGAAGTTTTCCACTTGAGGAATATATTAAGGCTCTAGATCGTTCTAAGGATGAGATGTACTACAATCACTCTCTCGGTATGCGATATAGTAAGATTACTGAGCAAATATTTGTGGGATCCTGCATACAAACAGACGATGATGTGGAAACCTTGTCAAAAGTTGAGGGAGTTACGGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGACTCTTGTCAAAGGAATAATATTCTTATTATCAACTATCCTATACGGGATGGGGATTCTTATGACATGAGAAAAAAACTCCCATTTTGTGTCGGGCTTTTATTACGGTTGCTAAGAAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGATCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACCTGCAGGCCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGCGAACATGATGGTCCTCCCACACATGCTGTCACATTTGTGTGGAACGGTCACGAGGGAGAGGATGTAAATTTGGTTGGAGACTTCACCGCAAATTGGAAAGAACCCCTTAAGGCAAAGCATCGGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTTATTGTTAATGGACAATGGAAGCATTCAACATCTTCACCTGCTGAAAGGGATGAAAGCGGAAATGTTAACAATATAATTATGATCGGTGAAACTGCCAGTGTTCGGCCTTCTGTTCAGCACCAGCAAAAAGATGCCAACGTTGTAAAGGTGATGGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCAAAGGCTGCTCGTTGTATTGCTTTCTCTATCTGCCCTCTCAGATTAGCTCCCAAATAG 1764 0.4223 MSSLQFNLHPLPPSQSPSPLLTTSNISSFSPTSLSIFYNHHHLLRFNLKTLKNHRIFAMSTDSTFKMNLNEYLVTLDKPLGIRFALTSDGKIIVHSLAKGGNAEKSRIIMVGDTLKKAGDSSQNSLVEIKDVGDTQKVLNEQTSSFSLVLERPASTFPIQLLHNKTNDLEIVYNRGRVPVVTWNKTLLASNLQSSGDSCGSSGFSMFNSKFLNSNGSKLLGNQNQHAITHGERNSFTEQTIQLACVFTEEACGDGDWAHGSFPLEEYIKALDRSKDEMYYNHSLGMRYSKITEQIFVGSCIQTDDDVETLSKVEGVTAVLNFQSGTEAENWGINVKSINDSCQRNNILIINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGEHDGPPTHAVTFVWNGHEGEDVNLVGDFTANWKEPLKAKHRGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTSSPAERDESGNVNNIIMIGETASVRPSVQHQQKDANVVKVMERPLNEKERFMLAKAARCIAFSICPLRLAPK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1076g00002 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 41 584 - -
Vivi1076g00002 587 CDD E_set_AMPKbeta_like_N 454 533 - -
Vivi1076g00002 587 Gene3D Immunoglobulins 441 537 IPR013783 -
Vivi1076g00002 587 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1076g00002 587 Pfam Dual specificity phosphatase, catalytic domain 311 417 IPR000340 GO:0008138|GO:0016311
Vivi1076g00002 587 Gene3D Protein tyrosine phosphatase superfamily 280 547 IPR029021 -
Vivi1076g00002 587 SUPERFAMILY PDZ domain-like 77 161 IPR036034 GO:0005515
Vivi1076g00002 587 Pfam Glycogen recognition site of AMP-activated protein kinase 454 535 IPR032640 -
Vivi1076g00002 587 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 280 447 - -
Vivi1076g00002 587 CDD DSP_laforin-like 286 432 IPR045204 GO:0019203
Vivi1076g00002 587 ProSiteProfiles Dual specificity protein phosphatase domain profile. 287 446 IPR020422 GO:0006470|GO:0008138
Vivi1076g00002 587 SUPERFAMILY E set domains 451 534 IPR014756 -
Vivi1076g00002 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 277 420 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1076g00002 138 587 Protein tyrosine phosphatase (PTP) family AT3G01510 66.444 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1076g00002 - - mtr:25498007 1071.23