Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1075g00003 ATGGATTTCACCTCAAACCTCACTGATCTTCCTCCAAACAAGCGACACAGATTCATTCAACACCACCACCACCAACAACAACAACCTAGTCCATGTTCACCTCTACCCACCAAAAAACGCAAAGAATCTCGAAACTCATCACTTTTTCACACCCCACCACCAACACCTTCACCCTCTATATATTCTCTACCCACCAAAAAACGAGTCTCCGCCCTTCAACCCCACTTTTACCACCACAACACCACCGCAAACGACGCTGTTATCCACCCACTCATAGATCTCAATGTCGAATACAATCCCGATCTCCACTCACCCATCCCAGCCGACAAAAAACCTCAACAACAACAAAAACAAGACACCGACAACAACAACATCAACACTGACAAAGAAGTTGTCGCTGAAGAAGATGGGATTTTATGCTGCGTGTGTCAAAGCACCGACGCTAACTCCGAAGACCCAATTGTTTTTTGTGACGGTTGTAATCTAATGGTCCACGCTTCCTGCTACGGAAACCCTCTAGCAAAACAAATCCCCGAGGGTGATTGGTTCTGTGAACAGTGTCGTATTACTGATACGAATACAGATCCAATACGCTGCTGTCTCTGTCCGACAAAAGAAGGTGCCATGAAACAAACGATAGACGGAAAATGGGCTCACGTGGTGTGCGCTCTACTTGTTCCCGAAGTGTATTTTGTTGATCCAGAAGGGAGAGAAAAGATCGATTATTCTAAGGTTCCGAAAAAGAGATGGTTGGAGAAATGCTATGTTTGTGGGTGCTGTGATGGGTGTGCTTTGGTTTGTTCTGAACCGAAGTGTGGTTTGGGGTTTCATATTACTTGTGGGATTAAAGAGGATGTTTGTATTGAGTATAAGGAAGGGAAGAAAGGTGCTACTGTTGTTGCTGGGTTTTGTAAAACCCATTCTCAAATCTGGGAAAAGAACAAGGGATCTGGGAAATACAAGATTGTTGCAGCTGAAGATAAGTAG 987 0.4448 MDFTSNLTDLPPNKRHRFIQHHHHQQQQPSPCSPLPTKKRKESRNSSLFHTPPPTPSPSIYSLPTKKRVSALQPHFYHHNTTANDAVIHPLIDLNVEYNPDLHSPIPADKKPQQQQKQDTDNNNINTDKEVVAEEDGILCCVCQSTDANSEDPIVFCDGCNLMVHASCYGNPLAKQIPEGDWFCEQCRITDTNTDPIRCCLCPTKEGAMKQTIDGKWAHVVCALLVPEVYFVDPEGREKIDYSKVPKKRWLEKCYVCGCCDGCALVCSEPKCGLGFHITCGIKEDVCIEYKEGKKGATVVAGFCKTHSQIWEKNKGSGKYKIVAAEDK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1075g00003 328 PANTHER PHD FINGER PROTEINS 22 313 - -
Vivi1075g00003 328 ProSiteProfiles Zinc finger PHD-type profile. 137 190 IPR019787 -
Vivi1075g00003 328 MobiDBLite consensus disorder prediction 99 124 - -
Vivi1075g00003 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 310 IPR013083 -
Vivi1075g00003 328 SUPERFAMILY FYVE/PHD zinc finger 134 204 IPR011011 -
Vivi1075g00003 328 Pfam PHD-finger 140 188 IPR019787 -
Vivi1075g00003 328 ProSiteProfiles Extended PHD (ePHD) domain profile. 196 308 IPR034732 -
Vivi1075g00003 328 MobiDBLite consensus disorder prediction 109 124 - -
Vivi1075g00003 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 195 IPR013083 -
Vivi1075g00003 328 Pfam PHD-zinc-finger like domain 198 307 - -
Vivi1075g00003 328 CDD PHD_BRPF_JADE_like 139 187 - -
Vivi1075g00003 328 MobiDBLite consensus disorder prediction 19 62 - -
Vivi1075g00003 328 SMART PHD_3 253 308 IPR001965 -
Vivi1075g00003 328 SMART PHD_3 139 188 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1075g00003 20 327 C2H2 Transcription Factor Family AT3G14740 47.988 2.66e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1075g00003 zf-HC5HC2H_2 3.1e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1075g00003 K11380 - gmx:100802652 365.155