Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1073g00006 ATGAGAAAGAAAAGTATTCCATATTGTTCTTTTCAATATCCATCTTGGTGTCGTGATGATAAACACACACAACCTTTAAGAGGGAATCAAAGTGACAATGACAATTCTGAGAAAGAGAAACATGCATGTCATGTTTGCAGTAAGGGTTTTCCGTCCAAAAAGGCTTTGAATGGACACATGAGAATGCACAAAAAGGGTAACAAGGCTATTCCTCCGCCACCAATTTCATCTCCTCAGAATATTGACTTATCACAATATTTGCCACCAAGATCGCATAACTGCAGCAAGAGGAATAGTGATATCAATACTATTGATAACGATTATGGTGACAGGAAAAGGATGAAGCTTCACGGAAATATGGTTAACGAGAAGGTCAAGGAACAAGCTTCGACGCCAATTACTGATCATGTTAGCGGCATTGATGAAAGAGTGAAGATGAAAGTGGAGGATACTGGTGTTGAGATTCAAGATTGTTAA 477 0.3857 MRKKSIPYCSFQYPSWCRDDKHTQPLRGNQSDNDNSEKEKHACHVCSKGFPSKKALNGHMRMHKKGNKAIPPPPISSPQNIDLSQYLPPRSHNCSKRNSDINTIDNDYGDRKRMKLHGNMVNEKVKEQASTPITDHVSGIDERVKMKVEDTGVEIQDC 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1073g00006 158 SMART c2h2final6 41 63 IPR013087 -
Vivi1073g00006 158 Gene3D Classic Zinc Finger 16 119 - -
Vivi1073g00006 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vivi1073g00006 158 Pfam C2H2-type zinc finger 41 65 - -
Vivi1073g00006 158 MobiDBLite consensus disorder prediction 63 98 - -
Vivi1073g00006 158 MobiDBLite consensus disorder prediction 79 98 - -
Vivi1073g00006 158 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1073g00006 158 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vivi1073g00006 158 MobiDBLite consensus disorder prediction 20 39 - -
Vivi1073g00006 158 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1073g00006 zf-C2H2_6 2.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1073g00006 - - vvo:131636698 324.324