Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1070g00011 ATGGAGTCAAAGTGCTGCATGAACGGTTTGTGTGGTGCCTCCACGTCGATACGGTGGCGGAAAGGTTGGATACTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGAAATCAGAGTTTTGTGATGTGTTCCATGCGAAAGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTTCACTGTGGATGTGTTGCTTCAAGGTCTCAGCTTGAAATACTTGATACTAGTGGTGTAAGCTGTATAAACTGTGCAAGTAATTTGGGACTTCAACCTATTGTTAGTAATGAAAAGCCCAATGAATCTGAAACAGCAAAGGGAAAACATGTCAGTGCGCAGCAGTGCATATCTTTGGTTGACCAATTAAATGTGAAGGATATGCAAGTTGGGAATTATGTAGGAAATGACGGTCTGAGGTGCTGGCTCAAACCTCACAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACATTCTGTTGGAGAATTTGGTAACACTTCGATATCTCAATTTCATCTTGAGTCAAATGGATCATCTAGGACTGACAATGTAGAGAACTGTAAGGCAGACAACATGCAAGGTCTATATGAATCACTGGCACATACAAATTTGAGTATGACCCTTGCTGCCCCTTTGGTAAATTTGAATCCCTTTCATAATGCCCTTGTTGATGAAAGAGAACAAAGAAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAGACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGGTAATGCAGGCACGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAATCAGTTGCTTCCACGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATCCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGGTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATATCTCAACCTGAGGGCCTTCCTCTGCGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGTAGGATGTATGTTTTAGAAGGAGTAACCCCCTGCATTCAGTCTATGCAACTGCAAGCTGGTGATACTGTTACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTACTTCATTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTACCGTGGCCTTCTTCAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGCGGTGACATGGATTGGCATAATGTAGAAGCACCCGAAAGCAGGAAAAGAGATGCATTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACCAGAAATATTGGGTCAAAGAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCGCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGACCACATATTTGAAGAATATGAAGAGCCTCCTGTCTTTGGAAAGAAGAGTATATTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGGCACAATGTGATAGTTGCTTAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCTCTAAGTGGACATGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATTATCTTTTGAGAATGAACAAGGAATGTGAAGGGCAGTAA 1959 0.4278 MESKCCMNGLCGASTSIRWRKGWILRSGEFADLCDKCGSAYEKSEFCDVFHAKDSGWRECTSCGKRLHCGCVASRSQLEILDTSGVSCINCASNLGLQPIVSNEKPNESETAKGKHVSAQQCISLVDQLNVKDMQVGNYVGNDGLRCWLKPHNVDMDGPSTEIKPEVLHSVGEFGNTSISQFHLESNGSSRTDNVENCKADNMQGLYESLAHTNLSMTLAAPLVNLNPFHNALVDEREQRKMSPPLLLASRSRHLLPRPPRPTLSPGLEGNAGTVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTSLQETFPSNMPNGSHSSETSYSGVYENIPILSGYRGLLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEAPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHIFEEYEEPPVFGKKSIFVVRSNGINEQWAQCDSCLKWRKLPVDVLIPSKWTCMENFWDQSRCSCAAPNELNPRELDYLLRMNKECEGQ 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1070g00011 652 Gene3D - 589 644 - -
Vivi1070g00011 652 SMART B3_2 321 421 IPR003340 GO:0003677
Vivi1070g00011 652 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Vivi1070g00011 652 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vivi1070g00011 652 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Vivi1070g00011 652 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vivi1070g00011 652 Gene3D - 299 426 IPR015300 -
Vivi1070g00011 652 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vivi1070g00011 652 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vivi1070g00011 652 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 647 - -
Vivi1070g00011 652 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1070g00011 1 648 B3 DNA Binding Superfamily AT4G32010 52.977 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1070g00011 B3 8.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1070g00011 K09287 - gmx:100778833 1096.65