Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1070g00010 ATGGAGTCAAAGTGCTGCATGAACGGTTTGTGTGGTGCCTCCACGTCGATACGGTGGCGGAAAGGTTGGATACTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGAAATCAGAGTTTTGTGATGTGTTCCATGCGAAAGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTTCACTGTGGATGTGTTGCTTCAAGGTCTCAGCTTGAAATACTTGATACTAGTGGTGTAAGCTGTATAAACTGTGCAAGTAATTTGGGACTTCAACCTATTGTTAGTAATGAAAAGCCCAATGAATCTGAAACAGCAAAGGGAAAACATGTCAGTGCGCAGCAGTGCATATCTTTGGTTGACCAATTAAATGTGAAGGATATGCAAGTTGGGAATTATGTAGGAAATGACGGTCTGAGGTGCTGGCTCAAACCTCACAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACATTCTGTTGGAGAATTTGGTAACACTTCGATATCTCAATTTCATCTTGAGTCAAATGGATCATCTAGGACTGACAATGTAGAGAACTGTAAGGCAGACAACATGCAAGGTCTATATGAATCACTGGCACATACAAATTTGAGTATGACCCTTGCTGCCCCTTTGGTAAATTTGAATCCCTTTCATAATGCCCTTGTTGATGAAAGAGAACAAAGAAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAGACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGGTAATGCAGGCACGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAATCAGTTGCTTCCACGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATCCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGGTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATATCTCAACCTGAGGGCCTTCCTCTGCGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGTAGGATGTATGTTTTAGAAGGAGTAACCCCCTGCATTCAGTCTATGCAACTGCAAGCTGGTGATACTGTTACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTACTTCATTACAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGCGGTGACATGGATTGGCATAATGTAGAAGCACCCGAAAGCAGGAAAAGAGATGCATTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACCAGAAATATTGGGTCAAAGAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCGCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGACCACATATTTGAAGAATATGAAGAGCCTCCTGTCTTTGGAAAGAAGAGTATATTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGGCACAATGTGATAGTTGCTTAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCTCTAAGTGGACATGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATTATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCACTAGCAAGCCAGAGGCCAGCTTTGGAACGTGAATCTTCTGGTCTTGATGCTTTGGCCAGTGCTGCAGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTGACCAGTACCACTACAAAACACCCTCGTCATAGACCCGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTTCATGCACCTGTAACGTGTGCTTGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGAGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAATGATGAATCAGAAGTAGACAGCACTACTCGACATTTAACTCCAGTTGATGGTTCGGAGATTGAAGCAAGGGTGCCAAATGAGTTAAGCTCAAGGAGTCAAGACCAAGTGGTTGAAGCTGCCAAAGGACAATTAGACTTGAACTCCCAACCGGACCAGGAAGACATGCAAGCTGGACCAAACACTTTGAGCATGATGTCTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTCTCTAGCTTGATATCAGAGCAGCAAACAAACTCAACATCAAATGTGCAGCCACAGACAACCACTGAGAGTGAGGGAAGACAAAATGAAGATTGCTGTACTGCTTCTGCAGGTCATGAACAGGTAGGCAGTCCTGAAGAAAACAGTGAGCAAGACAGAGACCAAAACAATTCAGTTTCATGA 2622 0.4394 MESKCCMNGLCGASTSIRWRKGWILRSGEFADLCDKCGSAYEKSEFCDVFHAKDSGWRECTSCGKRLHCGCVASRSQLEILDTSGVSCINCASNLGLQPIVSNEKPNESETAKGKHVSAQQCISLVDQLNVKDMQVGNYVGNDGLRCWLKPHNVDMDGPSTEIKPEVLHSVGEFGNTSISQFHLESNGSSRTDNVENCKADNMQGLYESLAHTNLSMTLAAPLVNLNPFHNALVDEREQRKMSPPLLLASRSRHLLPRPPRPTLSPGLEGNAGTVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTSLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEAPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHIFEEYEEPPVFGKKSIFVVRSNGINEQWAQCDSCLKWRKLPVDVLIPSKWTCMENFWDQSRCSCAAPNELNPRELDYLLRMNKEFKKQRLALASQRPALERESSGLDALASAAVLGDDASDSGRTPVVTSTTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCLTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTNDESEVDSTTRHLTPVDGSEIEARVPNELSSRSQDQVVEAAKGQLDLNSQPDQEDMQAGPNTLSMMSLLEEANLPLETYLKQNGLSSLISEQQTNSTSNVQPQTTTESEGRQNEDCCTASAGHEQVGSPEENSEQDRDQNNSVS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1070g00010 873 Gene3D - 299 426 IPR015300 -
Vivi1070g00010 873 SMART B3_2 321 421 IPR003340 GO:0003677
Vivi1070g00010 873 Gene3D - 553 608 - -
Vivi1070g00010 873 MobiDBLite consensus disorder prediction 705 768 - -
Vivi1070g00010 873 Pfam CW-type Zinc Finger 555 597 IPR011124 GO:0008270
Vivi1070g00010 873 MobiDBLite consensus disorder prediction 819 848 - -
Vivi1070g00010 873 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vivi1070g00010 873 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vivi1070g00010 873 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vivi1070g00010 873 MobiDBLite consensus disorder prediction 651 665 - -
Vivi1070g00010 873 MobiDBLite consensus disorder prediction 819 873 - -
Vivi1070g00010 873 ProSiteProfiles Zinc finger CW-type profile. 550 600 IPR011124 GO:0008270
Vivi1070g00010 873 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vivi1070g00010 873 MobiDBLite consensus disorder prediction 645 666 - -
Vivi1070g00010 873 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 825 - -
Vivi1070g00010 873 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1070g00010 1 855 B3 DNA Binding Superfamily AT4G32010 50.637 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1070g00010 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1070g00010 K09287 - gmx:100778833 1424.45