Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1070g00006 ATGGAGTCAAAGTGCTGCATGAACGGTTTGTGTGGTGCCTCCACGTCGATACGGTGGCGGAAAGGTTGGATACTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGAAATCAGAGTTTTGTGATGTGTTCCATGCGAAAGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTTCACTGTGGATGTGTTGCTTCAAGGTCTCAGCTTGAAATACTTGATACTAGTGGTGTAAGCTGTATAAACTGTGCAAGTAATTTGGGACTTCAACCTATTGTTAGTAATGAAAAGCCCAATGAATCTGAAACAGCAAAGGGAAAACATGTCAGTGCGCAGCAGTGCATATCTTTGGTTGACCAATTAAATGTGAAGGATATGCAAGTTGGGAATTATGTAGGAAATGACGGTCTGAGGTGCTGGCTCAAACCTCACAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACATTCTGTTGGAGAATTTGGTAACACTTCGATATCTCAATTTCATCTTGAGTCAAATGGATCATCTAGGACTGACAATGTAGAGAACTGTAAGGCAGACAACATGCAAGGTCTATATGAATCACTGGCACATACAAATTTGAGTATGACCCTTGCTGCCCCTTTGGTAAATTTGAATCCCTTTCATAATGCCCTTGTTGATGAAAGAGAACAAAGAAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAGACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGGTAATGCAGGCACGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAATCAGTTGCTTCCACGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATCCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGGTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATATCTCAACCTGAGGGCCTTCCTCTGCGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGTAGGATGTATGTTTTAGAAGGAGTAACCCCCTGCATTCAGTCTATGCAACTGCAAGCTGGTGATACTGTTACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTACTTCATTACAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGCGGTGACATGGATTGGCATAATGTAGAAGCACCCGAAAGCAGGAAAAGAGATGCATTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACCAGAAATATTGGGTCAAAGAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCGCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGACCACATATTTGAAGAATATGAAGAGCCTCCTGTCTTTGGAAAGAAGAGTATATTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGGCACAATGTGATAGTTGCTTAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCTCTAAGTGGACATGTATGGAGAATTTTTGGGATCAAAGCAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATTATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCACTAGCAAGCCAGAGGCCAGCTTTGGAACGTGAATCTTCTGGTCTTGATGCTTTGGCCAGTGCTGCAGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTGACCAGTACCACTACAAAACACCCTCGTCATAGACCCGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTTCATGCACCTGTAACGTGTGCTTGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGAGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAATGATGAATCAGAAGTAGACAGCACTACTCGACATTTAACTCCAGTTGATGGTTCGGAGATTGAAGCAAGGGTGCCAAATGAGTTAAGCTCAAGGAGTCAAGACCAAGTGGTTGAAGCTGCCAAAGGACAATTAGACTTGAACTCCCAACCGGACCAGGAAGACATGCAAGCTGGACCAAACACTTTGAGCATGATGTCTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTCTCTAGCTTGATATCAGAGCAGCAAACAAACTCAACATCAAATGTGCAGCCACAGACAACCACTGAGAGTGAGGGAAGACAAAATGAAGATTGCTGTACTGCTTCTGCAGGTCATGAACAGGTAGGCAGTCCTGAAGAAAACAGTGAGCAAGACAGAGACCAAAACAATTCAGTTTCATGA 2625 0.4396 MESKCCMNGLCGASTSIRWRKGWILRSGEFADLCDKCGSAYEKSEFCDVFHAKDSGWRECTSCGKRLHCGCVASRSQLEILDTSGVSCINCASNLGLQPIVSNEKPNESETAKGKHVSAQQCISLVDQLNVKDMQVGNYVGNDGLRCWLKPHNVDMDGPSTEIKPEVLHSVGEFGNTSISQFHLESNGSSRTDNVENCKADNMQGLYESLAHTNLSMTLAAPLVNLNPFHNALVDEREQRKMSPPLLLASRSRHLLPRPPRPTLSPGLEGNAGTVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTSLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEAPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHIFEEYEEPPVFGKKSIFVVRSNGINEQWAQCDSCLKWRKLPVDVLIPSKWTCMENFWDQSSRCSCAAPNELNPRELDYLLRMNKEFKKQRLALASQRPALERESSGLDALASAAVLGDDASDSGRTPVVTSTTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCLTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTNDESEVDSTTRHLTPVDGSEIEARVPNELSSRSQDQVVEAAKGQLDLNSQPDQEDMQAGPNTLSMMSLLEEANLPLETYLKQNGLSSLISEQQTNSTSNVQPQTTTESEGRQNEDCCTASAGHEQVGSPEENSEQDRDQNNSVS 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1070g00006 874 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 826 - -
Vivi1070g00006 874 Gene3D - 299 426 IPR015300 -
Vivi1070g00006 874 SMART B3_2 321 421 IPR003340 GO:0003677
Vivi1070g00006 874 MobiDBLite consensus disorder prediction 652 666 - -
Vivi1070g00006 874 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vivi1070g00006 874 ProSiteProfiles Zinc finger CW-type profile. 550 601 IPR011124 GO:0008270
Vivi1070g00006 874 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vivi1070g00006 874 MobiDBLite consensus disorder prediction 706 769 - -
Vivi1070g00006 874 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vivi1070g00006 874 MobiDBLite consensus disorder prediction 820 849 - -
Vivi1070g00006 874 MobiDBLite consensus disorder prediction 646 667 - -
Vivi1070g00006 874 Pfam CW-type Zinc Finger 555 598 IPR011124 GO:0008270
Vivi1070g00006 874 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vivi1070g00006 874 MobiDBLite consensus disorder prediction 820 874 - -
Vivi1070g00006 874 Gene3D - 553 609 - -
Vivi1070g00006 874 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1070g00006 1 856 B3 DNA Binding Superfamily AT4G32010 50.579 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1070g00006 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1070g00006 K09287 - gmx:100778833 1419.83