Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1068g00004 ATGTCACATGAATGTTTAACATGCGACAAAAAATTCCAGATTTCATGTCAAGCGACATGTTATCACTGGATTTGTGGAACATGTATGATGTATATTTGGATGTGGCGAAATTTTGAGCGCTGCAAATGTCCAATTTGTGATAAGCCCGTCGATTTTTTGATTCCAACATTAAAGAACAAATCTCGTCAAAACCCTCAAGTGTTGGCTAAAATACATGCTTACAACCATATGTTTGGTCCTATATCTAACTTTCCATTTTTCTTTCTTTATCATGTGCTTTTTAGGGATCTTCTTACCAATAATGTATCCTCTACTATTCTTTTGAATGCTGGATTCTTCATTAGTTTTACAATGAATCTTGCGTACATGTTAAGCCCTTTAAGAGAGAAATTTGGAATAATAATAGTTTATCTATTATGGCTAATCTGGTTATCACGTACTGCTTCTGTCTATAAATCGGAACTTTGCATCCGTCACGGTGGTAATTTTAGAGGGTGGAAAATTATAACATGA 513 0.3431 MSHECLTCDKKFQISCQATCYHWICGTCMMYIWMWRNFERCKCPICDKPVDFLIPTLKNKSRQNPQVLAKIHAYNHMFGPISNFPFFFLYHVLFRDLLTNNVSSTILLNAGFFISFTMNLAYMLSPLREKFGIIIVYLLWLIWLSRTASVYKSELCIRHGGNFRGWKIIT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1068g00004 170 ProSiteProfiles Zinc finger RING-type profile. 5 47 IPR001841 -
Vivi1068g00004 170 PANTHER UNCHARACTERIZED 3 128 IPR038896 GO:0061630
Vivi1068g00004 170 SUPERFAMILY RING/U-box 3 55 - -
Vivi1068g00004 170 ProSitePatterns Zinc finger RING-type signature. 20 29 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1068g00004 5 84 C3H Transcription Factor Family AT4G33940 34.118 7.74e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1068g00004 K15707 - psat:127129309 196.438