Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1068g00002 ATGGAGACGGCACCTAAACTCGAAGAAAATCTTTATTCCATCGCTGAAAATGGAAGCAATCCCCAAGATGTTGATCAAAGACTCGATCTTGGTGACAACAAGCACAAAGGAAAATGGACTGAAGATGAGGACTGGCTTCTTGGAGCATTTGTAGATTTGTTTGGACTTCAAAATTGGTCCTACATTGCAACGTTGATTGAAGGAAAGACAAACAAACAATGCTGGAATCGATGGCATAAACATGTTCGACCAGATATAGAGAAGGGGCCATGGAGCAAAGAGGAAGACATGATACTGATTGAAGCTAATAAAGAAGTTGGAAACAAGTGGACAGAAATTGCAAAGAGATTACCACGTCGTACGGAGAACTCGGTCAAGAACCACTGGTATAATACTAAGAAGCGTCTAAATTCCAAGAAGGCTCAAAATGAAAGAAACCAAGATTCAAATGAAGATTTGCTTCTGAATTATATCAAGGGAATCATTGTTGTTCAAGAAGATGAAAATGAAAGCAATATGGAAAACGACGTTGGTGTTGATTGTGTTATGAACAAAAGCTCAGAGAGTGACTTCAACTTTAAAGGTTGGGATAGTCAAGAAAAGGATGAAGTTGGCAGCTATGTCTCATGGGATAGTCAAGAATTATGA 648 0.3889 METAPKLEENLYSIAENGSNPQDVDQRLDLGDNKHKGKWTEDEDWLLGAFVDLFGLQNWSYIATLIEGKTNKQCWNRWHKHVRPDIEKGPWSKEEDMILIEANKEVGNKWTEIAKRLPRRTENSVKNHWYNTKKRLNSKKAQNERNQDSNEDLLLNYIKGIIVVQEDENESNMENDVGVDCVMNKSSESDFNFKGWDSQEKDEVGSYVSWDSQEL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1068g00002 215 Gene3D - 90 154 - -
Vivi1068g00002 215 Pfam Myb-like DNA-binding domain 88 132 IPR001005 -
Vivi1068g00002 215 Pfam Myb-like DNA-binding domain 36 81 IPR001005 -
Vivi1068g00002 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vivi1068g00002 215 CDD SANT 90 133 IPR001005 -
Vivi1068g00002 215 CDD SANT 38 82 IPR001005 -
Vivi1068g00002 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 82 IPR017930 -
Vivi1068g00002 215 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vivi1068g00002 215 Gene3D - 35 88 - -
Vivi1068g00002 215 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Vivi1068g00002 215 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Vivi1068g00002 215 SMART sant 87 135 IPR001005 -
Vivi1068g00002 215 SMART sant 35 84 IPR001005 -
Vivi1068g00002 215 ProSiteProfiles SANT domain profile. 86 137 IPR017884 -
Vivi1068g00002 215 PANTHER MYB PROTEIN-RELATED 36 149 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1068g00002 36 161 MYB Transcription Factor Family AT4G18770 53.968 4.92e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1068g00002 Myb_DNA-binding 5.6e-09 CL0123