Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1066g00013 ATGGGTAAAGCACCTTGTTGTGATAAACATGGAGTGAGGAGAGGAGCTTGGACTCCTGAAGAAGATCAAGCTTTGGCTGACTATATCAACAAACATGGCCATGGAAGTTGGCGTACGCTTCCTAAGCATGCAGGTCTCTTGAGATGTGGAAAAAGTTGTCGGCTTCGATGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCCCATTTACTAATGAAGAAGAAACTACTATTATGCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAGCTACCTGGAAGAACAGACAACGAGATTAAGAACTACTGGAACACACATCTAAAGAAGCGTGTCATTCGGTCACTAGGGGAAAAACATCCGTGTCTTATTCCTGATGGGAATATCCTGTCTAACAATGCTCCTTCTACGCGGCACATGGTACAATGGGAAAGTGCGAGGGTTGAGGCAGAGGCAAGGTTGTCAATTGAATCCACATTGCACAATTCAGGCTCTACGACTAAAACATATCCGGATTACTTTCTTAAACTTTGGAATTCTGATGTTGGCCTGTCGTTTCGTAAGATCAAGGGAAAGGAAGAACTGGTGTCCCAAAGTCTAGTCTCACAAGCATCGGCTTCATCACTATCATCGACAAAGTTAGACGAGTCATGTTCTGATGTCTCGTCTCAGGTGAAAAACAGTCAAAAGCATAAGCAAAGCCTTAAAGTGTCAACAACACCTAAGCTTGAAATTGACAACATGAATCAAGAACAAAACAGGCCTCGCGAACAAACAAATAGCTATAAACCAAAGCTTGGCGACAATAGAGCTGGTTCAGACTCAGGAAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTGTTACATATGCCTGATGATATAGAATTCTTGGGACACACTGACAATTTCTTGAATCTCCTTGATGGTAGATATGACTAA 963 0.4278 MGKAPCCDKHGVRRGAWTPEEDQALADYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEETTIMQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRVIRSLGEKHPCLIPDGNILSNNAPSTRHMVQWESARVEAEARLSIESTLHNSGSTTKTYPDYFLKLWNSDVGLSFRKIKGKEELVSQSLVSQASASSLSSTKLDESCSDVSSQVKNSQKHKQSLKVSTTPKLEIDNMNQEQNRPREQTNSYKPKLGDNRAGSDSGNYEFLDTSDSALKHLLHMPDDIEFLGHTDNFLNLLDGRYD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1066g00013 320 SMART sant 13 63 IPR001005 -
Vivi1066g00013 320 SMART sant 66 114 IPR001005 -
Vivi1066g00013 320 CDD SANT 69 112 IPR001005 -
Vivi1066g00013 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi1066g00013 320 FunFam Myb transcription factor 11 67 - -
Vivi1066g00013 320 CDD SANT 16 61 IPR001005 -
Vivi1066g00013 320 MobiDBLite consensus disorder prediction 224 281 - -
Vivi1066g00013 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi1066g00013 320 Gene3D - 69 116 - -
Vivi1066g00013 320 FunFam MYB transcription factor 69 116 - -
Vivi1066g00013 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi1066g00013 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi1066g00013 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi1066g00013 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi1066g00013 320 MobiDBLite consensus disorder prediction 224 270 - -
Vivi1066g00013 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi1066g00013 320 Gene3D - 14 66 - -
Vivi1066g00013 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1066g00013 1 212 MYB Transcription Factor Family AT3G61250 61.435 9.74e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1066g00013 Myb_DNA-binding 3.6e-16 CL0123