LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1064g00004	ATGGAAGAGGAGCATAAGGGAGGTGAAGAAGTAAAGTACAGGGGTGTAAGGAGAAGACCATGGGGAAAATATGGGGCAGAGATTAGAGATCCTACAAAGGCAACTGGAAGACAATGGTTAGGAACGTTTGACACAGCTGAGGAAGCTGCTAGAGCTTATGATTGTGCTGCCATTCGTTTAAGAGGTGCTCTTGCCATTCTCAATTTTCCTGATGAATACTATCTTCATCTTTCTTCTTTATCGCGCTCGTCGTCATCGTCGTCTGCTAGTTGTTTTAGAGAGCAAAAGGAAGTAATTGAGTTTGAGTATTTGGATAACAAGGTTTTGGAAGATCTTCTTGGATCATCTAATGAAGATAATGATGATTGA	369	0.4119	MEEEHKGGEEVKYRGVRRRPWGKYGAEIRDPTKATGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEYYLHLSSLSRSSSSSSASCFREQKEVIEFEYLDNKVLEDLLGSSNEDNDD	122

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1064g00004	122	PRINTS	Ethylene responsive element binding protein signature	13	24	IPR001471	GO:0003700\|GO:0006355
	Vivi1064g00004	122	PRINTS	Ethylene responsive element binding protein signature	36	52	IPR001471	GO:0003700\|GO:0006355
	Vivi1064g00004	122	ProSiteProfiles	AP2/ERF domain profile.	12	70	IPR001471	GO:0003700\|GO:0006355
	Vivi1064g00004	122	CDD	AP2	12	71	IPR001471	GO:0003700\|GO:0006355
	Vivi1064g00004	122	Pfam	AP2 domain	12	62	IPR001471	GO:0003700\|GO:0006355
	Vivi1064g00004	122	PANTHER	DNA-BINDING DOMAIN	5	107	IPR044808	GO:0003700\|GO:0009873
	Vivi1064g00004	122	Gene3D	AP2/ERF domain	11	71	IPR036955	GO:0003700\|GO:0006355
	Vivi1064g00004	122	SMART	rav1_2	12	76	IPR001471	GO:0003700\|GO:0006355
	Vivi1064g00004	122	SUPERFAMILY	DNA-binding domain	12	72	IPR016177	GO:0003677
	Vivi1064g00004	122	FunFam	Ethylene-responsive transcription factor 2	12	71	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1064g00004	9	115	AP2-EREBP Transcription Factor Family	AT3G23230	55.462	5.01e-39	126

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi1064g00004		AP2	5.3e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1064g00004	-		-	gmx:100796977	160.999