Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1061g00009 ATGTCTACCTTGAAATTTTCTTTCATATTTTCCATATTTCTCTTTCTTTTTCACAGTTCAACTCAACTTTGTTTTAAGAAATATTGTGGAAAGCCTAACTCAGGTCTTCATTTTGAGTTCCCTTTCATATTAAGAGAAGATTATCAAAATAACAATAATCAAACTGATCGATGTGGATACCCAGGGTTTGAAATTTATTGTAATCATTCTAAGCAAGCTTTGCTTAAACTCCCAAATGATAAAAATTTTGTAGTCAAAAGTATTTCCCTTGAGAGACAAAGAATTTGGGTTAAAGGTCCCAATGATTGTCCACCACAAAGGTTCATAGAAAACATAAACTTCAACTATGATTCACCTTTTATATGGGACAACTCTTTTCATAGTAATTATGAAAATGTAACATTTCTCAATTGTAGTACTAATTCTTCAAAGGAACCAAATCCTATGATTGATGAACTTCCAACTATACCTTGTATGAGCAATGCAAATTACACGATTATGTATACGTTGCAATCATCTCTTGTTGAAAAGTTGAATTCGACGTGTCATAAGATTGGTTTTGCTGAGGTTCCAGTCAGAGATGATTCACAAGAACCAGTGGTAATCATGGATGGACTTTACTCTAATGCAATGTTGCGATGGAATACACCTTCATGTGGCTGCGAACCTGATCAATCCTGTGGCTTTTTAAATGATACGGGTCTTGATGTTACTTGTTATAGTAAGGTTATTAATTTCCCAGTTGGAAATCCTTCGACTCAGAGGCATAAAAAATTTAACTTTTTTCCGGTACTTTGGGGAGTATTAGGAGTTTTGTTCTTCATGTGGTGGGTATTTTTATCCATATATAATGATAGACAACAAAACCATATTCAACAAAGAGAGACAATTACAAACATAGAACCAAGTAATCAAGAACCACCTTGGTTTGTGTTTGGGCTTGATAGATCAATGATAGAACAATATCCAAAGATTCAACTAGCAGAAAGTGGACAATTACCTAAGTCAATTGACAAACTTTGTTCCATATGTCTTTGTGAGTATAAGCCTATGGAGACATTAAGGAGTATACCACAATGCAATCATCATTTTCATGTTGATTGTATAGATGTTTGGCTCAAAATGAATGCTACGTGTCCTTTATGTCGAAATCTGCCAGGGTTATGA 1167 0.3402 MSTLKFSFIFSIFLFLFHSSTQLCFKKYCGKPNSGLHFEFPFILREDYQNNNNQTDRCGYPGFEIYCNHSKQALLKLPNDKNFVVKSISLERQRIWVKGPNDCPPQRFIENINFNYDSPFIWDNSFHSNYENVTFLNCSTNSSKEPNPMIDELPTIPCMSNANYTIMYTLQSSLVEKLNSTCHKIGFAEVPVRDDSQEPVVIMDGLYSNAMLRWNTPSCGCEPDQSCGFLNDTGLDVTCYSKVINFPVGNPSTQRHKKFNFFPVLWGVLGVLFFMWWVFLSIYNDRQQNHIQQRETITNIEPSNQEPPWFVFGLDRSMIEQYPKIQLAESGQLPKSIDKLCSICLCEYKPMETLRSIPQCNHHFHVDCIDVWLKMNATCPLCRNLPGL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1061g00009 388 ProSiteProfiles Zinc finger RING-type profile. 341 383 IPR001841 -
Vivi1061g00009 388 SUPERFAMILY RING/U-box 340 384 - -
Vivi1061g00009 388 SMART ring_2 341 382 IPR001841 -
Vivi1061g00009 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 386 IPR046948 -
Vivi1061g00009 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 386 IPR013083 -
Vivi1061g00009 388 Pfam Wall-associated receptor kinase galacturonan-binding 26 98 IPR025287 GO:0030247
Vivi1061g00009 388 Pfam Ring finger domain 341 383 IPR001841 -
Vivi1061g00009 388 CDD RING-H2_EL5-like 341 383 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1061g00009 22 387 C3H Transcription Factor Family AT2G46495 31.452 4.88e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1061g00009 - - psat:127123903 657.136