Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1061g00004 ATGGCAGCCCTAGGGCAAATGAACGTCATTGAATTGCCGGCAGCCCCATCAGTGAAACTGAACGTCATTGAATTGCCGGCAGCCCCATCAGTGAAACTGAACGTCATTGAATCGCTTTTGCGGGGATCCCGAAGCGTTGATTGCTTTGAAAAATTGGTGCAAATTGGCGAAGGAACTTATGGTCAAGTTTACATGGCCCGAGAGATCCAAACTCGTGAAATCGTTGCTCTCAAGAAAATACGAATGGACAATGAGAAAGAAGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAGAAACTAAATCATGAAAATGTAATCAAATTGAAGGAAATCGTCACATCTCCAGGTCTTGAGAAAGATGATCAAGGGAGGCCAGATGGCAACAAATACAAAGGTGACATATATATGGTCTTCGAATATATGGACCATGATTTAAGGGGTCTTGCAGACCGGCCTGGCGTGAGGTTTACTGTCCCTCAAATTAAGTGTTACATGAGGCAGCTCTTGACAGGACTTCATTATTGTCATGTCAATCAAGTGCTTCACCGTGATATCAAAGGACCAAATCTTCTCATCGATAATGAAGGTAATCTGAAACTGGCAGATTTTGGATTGGCACGGTCATTTTCAAATGAGCATAATGCAAGCCTTACAAATCGAGTCATCACTTTATGGTACAGACCCCCCGAGTTACTATTGGGGACTACAAGGTATGGGCCAGCGGTAGACATGTGGTCCGTTGGGTGCATTTTCGCCGAGCTTCTTTATGGGAAGCCCATCTTTCCTGGAAAAGATGAGCCTGAGCAAGTAACTAGGATTTTTAGGCTTTGTGGAACCCCGGACGAGGTGAACTGGCCAGGAGTCCAGGAGACTCCTTGGTACAATCACTTTAAGCCGAAAAGAACGATGAAAAGGTGTCTGAGGGGTGCTTTCAGACACTTTGATCCTCATGCACTGGAGTTGTTGGACAAGATGCTCACACTCGATCCAGCTCAGAGAATTTCTGCGAAGGACGCACTTGATGCTGAGTACTTCTGGACTGATCCTTTACCATGTGATCCTAAGAGTTTACCCAAGTATGAGTCCTCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAACAATGGCAAAATGAAGAATACGCCAAGCGTCTTAAAATGCCTGCAGGACCCCATTGTGGTCCTCTTGGTGGAGGTGGAAGTGGCTATTCAGTTGGAGCTCGAAATTATCCTCAAGGTGGTCTTCATGGGTAG 1263 0.4505 MAALGQMNVIELPAAPSVKLNVIELPAAPSVKLNVIESLLRGSRSVDCFEKLVQIGEGTYGQVYMAREIQTREIVALKKIRMDNEKEGFPITAIREIKILKKLNHENVIKLKEIVTSPGLEKDDQGRPDGNKYKGDIYMVFEYMDHDLRGLADRPGVRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGPNLLIDNEGNLKLADFGLARSFSNEHNASLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLYGKPIFPGKDEPEQVTRIFRLCGTPDEVNWPGVQETPWYNHFKPKRTMKRCLRGAFRHFDPHALELLDKMLTLDPAQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQWQNEEYAKRLKMPAGPHCGPLGGGGSGYSVGARNYPQGGLHG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1061g00004 420 FunFam Cyclin-dependent kinase C-2 146 388 - -
Vivi1061g00004 420 SMART serkin_6 49 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1061g00004 420 MobiDBLite consensus disorder prediction 384 420 - -
Vivi1061g00004 420 SUPERFAMILY Protein kinase-like (PK-like) 44 356 IPR011009 -
Vivi1061g00004 420 PANTHER CELL DIVISION PROTEIN KINASE 47 354 - -
Vivi1061g00004 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vivi1061g00004 420 Gene3D Phosphorylase Kinase; domain 1 38 145 - -
Vivi1061g00004 420 FunFam Cyclin-dependent kinase C-2 37 145 - -
Vivi1061g00004 420 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Vivi1061g00004 420 CDD STKc_CDK9_like 49 348 - -
Vivi1061g00004 420 Pfam Protein kinase domain 49 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1061g00004 420 ProSiteProfiles Protein kinase domain profile. 49 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1061g00004 420 Gene3D Transferase(Phosphotransferase) domain 1 146 387 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1061g00004 1 419 Core Cell Cycle Gene Families AT5G10270 72.577 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi1061g00004 Pkinase 8.9e-74 CL0016